miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29403 5' -53.7 NC_006151.1 + 658 0.66 0.964407
Target:  5'- gGGCGCGgccgGGGCGggcucCGCGGAUC-GCa-- -3'
miRNA:   3'- -CCGUGCa---CUUGU-----GCGCCUAGaCGacc -5'
29403 5' -53.7 NC_006151.1 + 4608 0.69 0.89483
Target:  5'- uGGC-CGUgGGGCGCGUGGAccCggcGCUGGc -3'
miRNA:   3'- -CCGuGCA-CUUGUGCGCCUa-Ga--CGACC- -5'
29403 5' -53.7 NC_006151.1 + 5690 0.66 0.967629
Target:  5'- cGC-CGUGccGGCGCuGCGGccaccgCUGCUGGc -3'
miRNA:   3'- cCGuGCAC--UUGUG-CGCCua----GACGACC- -5'
29403 5' -53.7 NC_006151.1 + 11790 0.69 0.888069
Target:  5'- gGGCGCGUGGGCGagagggGCGGGguggGgUGGg -3'
miRNA:   3'- -CCGUGCACUUGUg-----CGCCUaga-CgACC- -5'
29403 5' -53.7 NC_006151.1 + 14475 0.67 0.935486
Target:  5'- gGGCGgGUGGGCggguggGCGgGGGUCgGgaGGg -3'
miRNA:   3'- -CCGUgCACUUG------UGCgCCUAGaCgaCC- -5'
29403 5' -53.7 NC_006151.1 + 15039 0.66 0.97064
Target:  5'- uGCGCGUccacGGCGCGCGGGgccccggcgccuUCUGCgcGGc -3'
miRNA:   3'- cCGUGCAc---UUGUGCGCCU------------AGACGa-CC- -5'
29403 5' -53.7 NC_006151.1 + 17402 0.7 0.834605
Target:  5'- gGGCGCGUG-GCGCGCGGca--GCaGGg -3'
miRNA:   3'- -CCGUGCACuUGUGCGCCuagaCGaCC- -5'
29403 5' -53.7 NC_006151.1 + 20155 0.72 0.752887
Target:  5'- cGGCGCGUGGACcgccgggccGCGCccGGGUCgcgGCcGGu -3'
miRNA:   3'- -CCGUGCACUUG---------UGCG--CCUAGa--CGaCC- -5'
29403 5' -53.7 NC_006151.1 + 20979 0.69 0.866427
Target:  5'- gGGCGCGUcgccGGGCACGaggaCGGcgCUGCcGGc -3'
miRNA:   3'- -CCGUGCA----CUUGUGC----GCCuaGACGaCC- -5'
29403 5' -53.7 NC_006151.1 + 21318 0.67 0.95341
Target:  5'- uGGCGCGaGAcgcccggcGCgGCGgGGGUCcgcgGCUGGa -3'
miRNA:   3'- -CCGUGCaCU--------UG-UGCgCCUAGa---CGACC- -5'
29403 5' -53.7 NC_006151.1 + 23007 0.7 0.850919
Target:  5'- cGCGgGUGGGgGCGCGGGggUGgUGGa -3'
miRNA:   3'- cCGUgCACUUgUGCGCCUagACgACC- -5'
29403 5' -53.7 NC_006151.1 + 25125 0.69 0.888069
Target:  5'- uGgGCGUGGACGCGCGacaaccccCUGCUGa -3'
miRNA:   3'- cCgUGCACUUGUGCGCcua-----GACGACc -5'
29403 5' -53.7 NC_006151.1 + 26977 0.66 0.967629
Target:  5'- aGCGCGcu-GCGCaGCGGGgcgcUCUGCUcGGg -3'
miRNA:   3'- cCGUGCacuUGUG-CGCCU----AGACGA-CC- -5'
29403 5' -53.7 NC_006151.1 + 27225 0.69 0.866427
Target:  5'- cGCGcCGUGGACGCGCaccuccucgGGGUCggGCgGGg -3'
miRNA:   3'- cCGU-GCACUUGUGCG---------CCUAGa-CGaCC- -5'
29403 5' -53.7 NC_006151.1 + 27441 0.7 0.817542
Target:  5'- gGGCGCGgcGGACGCgGUGGGUCggggGCgGGc -3'
miRNA:   3'- -CCGUGCa-CUUGUG-CGCCUAGa---CGaCC- -5'
29403 5' -53.7 NC_006151.1 + 28382 0.67 0.935486
Target:  5'- gGGCACGUgGGGCcCGUGGAgagaUUUGaUUGGg -3'
miRNA:   3'- -CCGUGCA-CUUGuGCGCCU----AGAC-GACC- -5'
29403 5' -53.7 NC_006151.1 + 28661 0.73 0.672702
Target:  5'- gGGCACGUgGGGCAaacgGCgGGAUCUGaUUGGg -3'
miRNA:   3'- -CCGUGCA-CUUGUg---CG-CCUAGAC-GACC- -5'
29403 5' -53.7 NC_006151.1 + 28940 0.78 0.43427
Target:  5'- gGGCACGUGGGCcCGagggcCGGAUCUGaUUGGg -3'
miRNA:   3'- -CCGUGCACUUGuGC-----GCCUAGAC-GACC- -5'
29403 5' -53.7 NC_006151.1 + 31645 0.72 0.762522
Target:  5'- cGCACGcGGGCGCGCGGGgagGgaGGa -3'
miRNA:   3'- cCGUGCaCUUGUGCGCCUagaCgaCC- -5'
29403 5' -53.7 NC_006151.1 + 33207 0.69 0.866427
Target:  5'- cGGCGCccccgGAGCACGCGGggCgccccgGCgGGc -3'
miRNA:   3'- -CCGUGca---CUUGUGCGCCuaGa-----CGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.