miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29403 5' -53.7 NC_006151.1 + 116167 1.12 0.003081
Target:  5'- aGGCACGUGAACACGCGGAUCUGCUGGc -3'
miRNA:   3'- -CCGUGCACUUGUGCGCCUAGACGACC- -5'
29403 5' -53.7 NC_006151.1 + 99552 0.82 0.257667
Target:  5'- aGCACGUGGgcgcggcGCGCGCGGcgCUGCUGc -3'
miRNA:   3'- cCGUGCACU-------UGUGCGCCuaGACGACc -5'
29403 5' -53.7 NC_006151.1 + 28940 0.78 0.43427
Target:  5'- gGGCACGUGGGCcCGagggcCGGAUCUGaUUGGg -3'
miRNA:   3'- -CCGUGCACUUGuGC-----GCCUAGAC-GACC- -5'
29403 5' -53.7 NC_006151.1 + 105025 0.76 0.519655
Target:  5'- aGCugGUGAcGCAgGCGGcgCUGCUGc -3'
miRNA:   3'- cCGugCACU-UGUgCGCCuaGACGACc -5'
29403 5' -53.7 NC_006151.1 + 76664 0.75 0.56987
Target:  5'- gGGCGCGUGu--GCGCGG-UC-GCUGGg -3'
miRNA:   3'- -CCGUGCACuugUGCGCCuAGaCGACC- -5'
29403 5' -53.7 NC_006151.1 + 66480 0.75 0.573946
Target:  5'- cGGCACGcUgcacaacugcugcgaGAGCGCGCGGAUCUucGCcGGg -3'
miRNA:   3'- -CCGUGC-A---------------CUUGUGCGCCUAGA--CGaCC- -5'
29403 5' -53.7 NC_006151.1 + 85179 0.75 0.580072
Target:  5'- gGGCGcCGccgccccgcUGGGCAuCGCGGAcCUGCUGGa -3'
miRNA:   3'- -CCGU-GC---------ACUUGU-GCGCCUaGACGACC- -5'
29403 5' -53.7 NC_006151.1 + 61488 0.75 0.594416
Target:  5'- aGGC-CGUGAGCugGCGcuccuggcugauagaGGUCUGCgGGu -3'
miRNA:   3'- -CCGuGCACUUGugCGC---------------CUAGACGaCC- -5'
29403 5' -53.7 NC_006151.1 + 76167 0.74 0.621187
Target:  5'- uGCACGUu-GCGCGCGag-CUGCUGGa -3'
miRNA:   3'- cCGUGCAcuUGUGCGCcuaGACGACC- -5'
29403 5' -53.7 NC_006151.1 + 122502 0.73 0.662432
Target:  5'- cGGCGCGccGGCGCGCGGAcgcgCUcCUGGa -3'
miRNA:   3'- -CCGUGCacUUGUGCGCCUa---GAcGACC- -5'
29403 5' -53.7 NC_006151.1 + 28661 0.73 0.672702
Target:  5'- gGGCACGUgGGGCAaacgGCgGGAUCUGaUUGGg -3'
miRNA:   3'- -CCGUGCA-CUUGUg---CG-CCUAGAC-GACC- -5'
29403 5' -53.7 NC_006151.1 + 104568 0.73 0.693134
Target:  5'- gGGCGCGc-GGCGCGCGGAcgugCUGCaGGc -3'
miRNA:   3'- -CCGUGCacUUGUGCGCCUa---GACGaCC- -5'
29403 5' -53.7 NC_006151.1 + 135105 0.72 0.713358
Target:  5'- gGGCggGCGgcgGuAGCGCGCGGggCggGCUGGg -3'
miRNA:   3'- -CCG--UGCa--C-UUGUGCGCCuaGa-CGACC- -5'
29403 5' -53.7 NC_006151.1 + 102976 0.72 0.713358
Target:  5'- cGGCGCGcu-GCugGCGcagCUGCUGGa -3'
miRNA:   3'- -CCGUGCacuUGugCGCcuaGACGACC- -5'
29403 5' -53.7 NC_006151.1 + 129609 0.72 0.713358
Target:  5'- gGGCACGUGcGCACcaGCGGGUCgaGCg-- -3'
miRNA:   3'- -CCGUGCACuUGUG--CGCCUAGa-CGacc -5'
29403 5' -53.7 NC_006151.1 + 54066 0.72 0.723369
Target:  5'- cGUugGUG-GCGCGCGGAcccUCUGCggcGGc -3'
miRNA:   3'- cCGugCACuUGUGCGCCU---AGACGa--CC- -5'
29403 5' -53.7 NC_006151.1 + 97610 0.72 0.733301
Target:  5'- gGGCACGUGcaccugcgagcGGCGCGCGGccauGUC-GUUGGu -3'
miRNA:   3'- -CCGUGCAC-----------UUGUGCGCC----UAGaCGACC- -5'
29403 5' -53.7 NC_006151.1 + 121412 0.72 0.733301
Target:  5'- cGGCGCGggcggGGACGuCGCGGggCUcgcgccggccucGCUGGu -3'
miRNA:   3'- -CCGUGCa----CUUGU-GCGCCuaGA------------CGACC- -5'
29403 5' -53.7 NC_006151.1 + 103224 0.72 0.733301
Target:  5'- cGCGCGUGcGCGCGauggaGGAcCUGCUGcGg -3'
miRNA:   3'- cCGUGCACuUGUGCg----CCUaGACGAC-C- -5'
29403 5' -53.7 NC_006151.1 + 92837 0.72 0.733301
Target:  5'- cGGCACGUGAagaacgAgACGCGGG-CgaaggaGCUGGc -3'
miRNA:   3'- -CCGUGCACU------UgUGCGCCUaGa-----CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.