miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 5' -54 NC_006151.1 + 89390 0.7 0.811034
Target:  5'- cGCGCGAGCGUgggCGUGAAu--CAGGa-- -3'
miRNA:   3'- -CGCGCUCGCA---GCACUUcguGUCCaac -5'
29404 5' -54 NC_006151.1 + 89178 0.68 0.890324
Target:  5'- gGCGCGGGgGUCG-GggGCGgAGa--- -3'
miRNA:   3'- -CGCGCUCgCAGCaCuuCGUgUCcaac -5'
29404 5' -54 NC_006151.1 + 86627 0.68 0.890324
Target:  5'- cCGCGAGCG-CGUGuGGCACAu---- -3'
miRNA:   3'- cGCGCUCGCaGCACuUCGUGUccaac -5'
29404 5' -54 NC_006151.1 + 84036 0.72 0.725296
Target:  5'- uGCGUGuGCGUgGUGcGGCugGGGgUGg -3'
miRNA:   3'- -CGCGCuCGCAgCACuUCGugUCCaAC- -5'
29404 5' -54 NC_006151.1 + 83367 0.68 0.903549
Target:  5'- cGCGCGGGCG-CGcaGgcGCcGCAGGUg- -3'
miRNA:   3'- -CGCGCUCGCaGCa-CuuCG-UGUCCAac -5'
29404 5' -54 NC_006151.1 + 83183 0.69 0.867988
Target:  5'- cGCGCGGGCGgcagagcUCGUuGAGCGCgAGGc-- -3'
miRNA:   3'- -CGCGCUCGC-------AGCAcUUCGUG-UCCaac -5'
29404 5' -54 NC_006151.1 + 82722 0.66 0.942167
Target:  5'- cCGCGAGgGUCaG-GAGGCGCAGcGg-- -3'
miRNA:   3'- cGCGCUCgCAG-CaCUUCGUGUC-Caac -5'
29404 5' -54 NC_006151.1 + 82619 0.74 0.591338
Target:  5'- cGCGCGGGCGcCGcGGugGGCGCGGGa-- -3'
miRNA:   3'- -CGCGCUCGCaGCaCU--UCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 81849 0.67 0.927092
Target:  5'- gGCGCGAgagcaggcgcGCGUCGcucucGAcGCGCAGGa-- -3'
miRNA:   3'- -CGCGCU----------CGCAGCa----CUuCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 81381 0.69 0.836931
Target:  5'- aGCGCGAgccGCGcCGcGgcGCcCAGGUUGg -3'
miRNA:   3'- -CGCGCU---CGCaGCaCuuCGuGUCCAAC- -5'
29404 5' -54 NC_006151.1 + 80926 0.72 0.684622
Target:  5'- cGUGC-AGCGUCGgguUGAAGCugGGGaUGg -3'
miRNA:   3'- -CGCGcUCGCAGC---ACUUCGugUCCaAC- -5'
29404 5' -54 NC_006151.1 + 80844 0.66 0.950999
Target:  5'- gGCGCGAgccGCGUCGacgUGAAcGacaGCAGGUc- -3'
miRNA:   3'- -CGCGCU---CGCAGC---ACUU-Cg--UGUCCAac -5'
29404 5' -54 NC_006151.1 + 78646 0.69 0.84519
Target:  5'- cGUGCGAGCuGguggaggCGgccGggGCGCGGGUg- -3'
miRNA:   3'- -CGCGCUCG-Ca------GCa--CuuCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 77090 0.68 0.903549
Target:  5'- cGUGCGAGC----UGAAGCGCGGGc-- -3'
miRNA:   3'- -CGCGCUCGcagcACUUCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 77016 0.7 0.792918
Target:  5'- cCGCGAGC--CGUGGAGCGcCAGGa-- -3'
miRNA:   3'- cGCGCUCGcaGCACUUCGU-GUCCaac -5'
29404 5' -54 NC_006151.1 + 76659 0.68 0.899681
Target:  5'- cGUGCGGGCG-CGUGugcgcggucgcugggGAGCAgGGGg-- -3'
miRNA:   3'- -CGCGCUCGCaGCAC---------------UUCGUgUCCaac -5'
29404 5' -54 NC_006151.1 + 75393 0.66 0.946704
Target:  5'- gGCGCgGGGCGg-GUGcguGCGCGGGUc- -3'
miRNA:   3'- -CGCG-CUCGCagCACuu-CGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 73275 0.67 0.915811
Target:  5'- uUGCcGGCGUugacCGUGcGGCGCAGGUa- -3'
miRNA:   3'- cGCGcUCGCA----GCACuUCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 72103 0.7 0.802056
Target:  5'- uGgGCGAGCGgcagCGUcaugggGAAGCGCagcuccAGGUUGg -3'
miRNA:   3'- -CgCGCUCGCa---GCA------CUUCGUG------UCCAAC- -5'
29404 5' -54 NC_006151.1 + 70896 0.66 0.958879
Target:  5'- cGCGCGcuGCGUCGUGcgcugccuGGCGCGcGUg- -3'
miRNA:   3'- -CGCGCu-CGCAGCACu-------UCGUGUcCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.