miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 5' -54 NC_006151.1 + 54648 0.7 0.82848
Target:  5'- gGCGCGAGCGcugCGUGGacgAGCACGa---- -3'
miRNA:   3'- -CGCGCUCGCa--GCACU---UCGUGUccaac -5'
29404 5' -54 NC_006151.1 + 81381 0.69 0.836931
Target:  5'- aGCGCGAgccGCGcCGcGgcGCcCAGGUUGg -3'
miRNA:   3'- -CGCGCU---CGCaGCaCuuCGuGUCCAAC- -5'
29404 5' -54 NC_006151.1 + 123271 0.69 0.84519
Target:  5'- cGCGCGGGCaccGUCGUGGacgAGCGCGagacGGg-- -3'
miRNA:   3'- -CGCGCUCG---CAGCACU---UCGUGU----CCaac -5'
29404 5' -54 NC_006151.1 + 78646 0.69 0.84519
Target:  5'- cGUGCGAGCuGguggaggCGgccGggGCGCGGGUg- -3'
miRNA:   3'- -CGCGCUCG-Ca------GCa--CuuCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 53658 0.69 0.84519
Target:  5'- -gGCGGGC-UCGUGggGCACGcGUa- -3'
miRNA:   3'- cgCGCUCGcAGCACuuCGUGUcCAac -5'
29404 5' -54 NC_006151.1 + 19020 0.69 0.861102
Target:  5'- cGCGCGccGGCGagGUGAAGCugcacgcCGGGUc- -3'
miRNA:   3'- -CGCGC--UCGCagCACUUCGu------GUCCAac -5'
29404 5' -54 NC_006151.1 + 51131 0.69 0.861102
Target:  5'- cGCGCaGGGCGUCccGGAGCACGucGGg-- -3'
miRNA:   3'- -CGCG-CUCGCAGcaCUUCGUGU--CCaac -5'
29404 5' -54 NC_006151.1 + 52600 0.69 0.861102
Target:  5'- uGCGCGuggacgaaGGCGUCGUc--GCGCAGGa-- -3'
miRNA:   3'- -CGCGC--------UCGCAGCAcuuCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 16983 0.69 0.866473
Target:  5'- gGCGCcagGAGCgGUUGUGGacccgcgcgaacauGGCGCGGGUg- -3'
miRNA:   3'- -CGCG---CUCG-CAGCACU--------------UCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 83183 0.69 0.867988
Target:  5'- cGCGCGGGCGgcagagcUCGUuGAGCGCgAGGc-- -3'
miRNA:   3'- -CGCGCUCGC-------AGCAcUUCGUG-UCCaac -5'
29404 5' -54 NC_006151.1 + 58353 0.69 0.868742
Target:  5'- cGCGCGAagcugguccgccGCGUCGUGAucucgacggagAGCGCGGc--- -3'
miRNA:   3'- -CGCGCU------------CGCAGCACU-----------UCGUGUCcaac -5'
29404 5' -54 NC_006151.1 + 51239 0.69 0.868742
Target:  5'- gGCGCGAGCGcUCGgcgcAGCucCAGGUc- -3'
miRNA:   3'- -CGCGCUCGC-AGCacu-UCGu-GUCCAac -5'
29404 5' -54 NC_006151.1 + 4226 0.68 0.876162
Target:  5'- gGCGCGGGCGggcgCGggcagccGGAGCggGCAGGg-- -3'
miRNA:   3'- -CGCGCUCGCa---GCa------CUUCG--UGUCCaac -5'
29404 5' -54 NC_006151.1 + 59521 0.68 0.876162
Target:  5'- cGCGCGcAGCGccgCGUGAGggcccagcGCGCGGGc-- -3'
miRNA:   3'- -CGCGC-UCGCa--GCACUU--------CGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 18660 0.68 0.883358
Target:  5'- cGCcCGGGCGUCGUccgGccGUACGGGUUc -3'
miRNA:   3'- -CGcGCUCGCAGCA---CuuCGUGUCCAAc -5'
29404 5' -54 NC_006151.1 + 44751 0.68 0.886172
Target:  5'- cGCGCGGGUGUUGUGuguGCgaucgcgcggagagaGCGGGg-- -3'
miRNA:   3'- -CGCGCUCGCAGCACuu-CG---------------UGUCCaac -5'
29404 5' -54 NC_006151.1 + 119120 0.68 0.890324
Target:  5'- cGCGCGgccGGCcUCGUgGggGCGCuGGUg- -3'
miRNA:   3'- -CGCGC---UCGcAGCA-CuuCGUGuCCAac -5'
29404 5' -54 NC_006151.1 + 53353 0.68 0.890324
Target:  5'- cGCGCGccgcguacuGCGUCGUGucGUacGCGGcGUUGa -3'
miRNA:   3'- -CGCGCu--------CGCAGCACuuCG--UGUC-CAAC- -5'
29404 5' -54 NC_006151.1 + 89178 0.68 0.890324
Target:  5'- gGCGCGGGgGUCG-GggGCGgAGa--- -3'
miRNA:   3'- -CGCGCUCgCAGCaCuuCGUgUCcaac -5'
29404 5' -54 NC_006151.1 + 51762 0.68 0.890324
Target:  5'- uGCGCagguuGGCGcgCGUGAAGCACAcGGc-- -3'
miRNA:   3'- -CGCGc----UCGCa-GCACUUCGUGU-CCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.