miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 5' -54 NC_006151.1 + 115960 1.1 0.003514
Target:  5'- aGCGCGAGCGUCGUGAAGCACAGGUUGu -3'
miRNA:   3'- -CGCGCUCGCAGCACUUCGUGUCCAAC- -5'
29404 5' -54 NC_006151.1 + 82619 0.74 0.591338
Target:  5'- cGCGCGGGCGcCGcGGugGGCGCGGGa-- -3'
miRNA:   3'- -CGCGCUCGCaGCaCU--UCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 5125 0.74 0.601685
Target:  5'- gGCGCGGGCGa-GUGggGCGCcGGg-- -3'
miRNA:   3'- -CGCGCUCGCagCACuuCGUGuCCaac -5'
29404 5' -54 NC_006151.1 + 8636 0.74 0.612056
Target:  5'- uGUGCGGGUGUCGgu-GGUGCGGGUg- -3'
miRNA:   3'- -CGCGCUCGCAGCacuUCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 130088 0.74 0.616209
Target:  5'- gGCGCGAGCagcucgcgcuccucgGcCGUGAAGCcCGGGUUc -3'
miRNA:   3'- -CGCGCUCG---------------CaGCACUUCGuGUCCAAc -5'
29404 5' -54 NC_006151.1 + 93745 0.73 0.653612
Target:  5'- aUGCGGGCcUCGUcGggGCGCGGGg-- -3'
miRNA:   3'- cGCGCUCGcAGCA-CuuCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 3162 0.73 0.653612
Target:  5'- gGCGCaGAGCuccUCGUGggGCAgCGGGUc- -3'
miRNA:   3'- -CGCG-CUCGc--AGCACuuCGU-GUCCAac -5'
29404 5' -54 NC_006151.1 + 65175 0.73 0.663978
Target:  5'- cGCGCGAG-G-CG-GAAGCGCGGGUc- -3'
miRNA:   3'- -CGCGCUCgCaGCaCUUCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 80926 0.72 0.684622
Target:  5'- cGUGC-AGCGUCGgguUGAAGCugGGGaUGg -3'
miRNA:   3'- -CGCGcUCGCAGC---ACUUCGugUCCaAC- -5'
29404 5' -54 NC_006151.1 + 100223 0.72 0.684622
Target:  5'- cCGCGGGCGcCGUGGccgAGCGCGuGGUg- -3'
miRNA:   3'- cGCGCUCGCaGCACU---UCGUGU-CCAac -5'
29404 5' -54 NC_006151.1 + 134992 0.72 0.714217
Target:  5'- cGgGCGGGCG-CGUcuuggcgGggGCGCGGGggGg -3'
miRNA:   3'- -CgCGCUCGCaGCA-------CuuCGUGUCCaaC- -5'
29404 5' -54 NC_006151.1 + 19256 0.72 0.715228
Target:  5'- aGCGCGuggaAGCGgggcUCGUGgcGCGCGGGg-- -3'
miRNA:   3'- -CGCGC----UCGC----AGCACuuCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 84036 0.72 0.725296
Target:  5'- uGCGUGuGCGUgGUGcGGCugGGGgUGg -3'
miRNA:   3'- -CGCGCuCGCAgCACuUCGugUCCaAC- -5'
29404 5' -54 NC_006151.1 + 133486 0.7 0.783632
Target:  5'- cCGCGGGCGUCaccuUGGcGGCGCGGGggGc -3'
miRNA:   3'- cGCGCUCGCAGc---ACU-UCGUGUCCaaC- -5'
29404 5' -54 NC_006151.1 + 77016 0.7 0.792918
Target:  5'- cCGCGAGC--CGUGGAGCGcCAGGa-- -3'
miRNA:   3'- cGCGCUCGcaGCACUUCGU-GUCCaac -5'
29404 5' -54 NC_006151.1 + 72103 0.7 0.802056
Target:  5'- uGgGCGAGCGgcagCGUcaugggGAAGCGCagcuccAGGUUGg -3'
miRNA:   3'- -CgCGCUCGCa---GCA------CUUCGUG------UCCAAC- -5'
29404 5' -54 NC_006151.1 + 34612 0.7 0.802056
Target:  5'- cGCGcCGAGCGc---GAGGCGCGGGUg- -3'
miRNA:   3'- -CGC-GCUCGCagcaCUUCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 130020 0.7 0.811034
Target:  5'- cGCGCGccacGGcCGUCGUGAgccAGCGCAGcGcgUGg -3'
miRNA:   3'- -CGCGC----UC-GCAGCACU---UCGUGUC-Ca-AC- -5'
29404 5' -54 NC_006151.1 + 89390 0.7 0.811034
Target:  5'- cGCGCGAGCGUgggCGUGAAu--CAGGa-- -3'
miRNA:   3'- -CGCGCUCGCA---GCACUUcguGUCCaac -5'
29404 5' -54 NC_006151.1 + 54648 0.7 0.82848
Target:  5'- gGCGCGAGCGcugCGUGGacgAGCACGa---- -3'
miRNA:   3'- -CGCGCUCGCa--GCACU---UCGUGUccaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.