miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 5' -54 NC_006151.1 + 2638 0.7 0.82848
Target:  5'- gGCGCGGGUGcucacCGUGuAGCGCAcGUUGu -3'
miRNA:   3'- -CGCGCUCGCa----GCACuUCGUGUcCAAC- -5'
29404 5' -54 NC_006151.1 + 3162 0.73 0.653612
Target:  5'- gGCGCaGAGCuccUCGUGggGCAgCGGGUc- -3'
miRNA:   3'- -CGCG-CUCGc--AGCACuuCGU-GUCCAac -5'
29404 5' -54 NC_006151.1 + 4226 0.68 0.876162
Target:  5'- gGCGCGGGCGggcgCGggcagccGGAGCggGCAGGg-- -3'
miRNA:   3'- -CGCGCUCGCa---GCa------CUUCG--UGUCCaac -5'
29404 5' -54 NC_006151.1 + 5125 0.74 0.601685
Target:  5'- gGCGCGGGCGa-GUGggGCGCcGGg-- -3'
miRNA:   3'- -CGCGCUCGCagCACuuCGUGuCCaac -5'
29404 5' -54 NC_006151.1 + 5243 0.66 0.958879
Target:  5'- cGCGCG-GCGgCGgcgGggGCcCGGGggGc -3'
miRNA:   3'- -CGCGCuCGCaGCa--CuuCGuGUCCaaC- -5'
29404 5' -54 NC_006151.1 + 8636 0.74 0.612056
Target:  5'- uGUGCGGGUGUCGgu-GGUGCGGGUg- -3'
miRNA:   3'- -CGCGCUCGCAGCacuUCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 14979 0.66 0.958879
Target:  5'- aGCGCGGGCGcuacgUCGUcGAgcaccccgAGUACGGGc-- -3'
miRNA:   3'- -CGCGCUCGC-----AGCA-CU--------UCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 16983 0.69 0.866473
Target:  5'- gGCGCcagGAGCgGUUGUGGacccgcgcgaacauGGCGCGGGUg- -3'
miRNA:   3'- -CGCG---CUCG-CAGCACU--------------UCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 18660 0.68 0.883358
Target:  5'- cGCcCGGGCGUCGUccgGccGUACGGGUUc -3'
miRNA:   3'- -CGcGCUCGCAGCA---CuuCGUGUCCAAc -5'
29404 5' -54 NC_006151.1 + 19020 0.69 0.861102
Target:  5'- cGCGCGccGGCGagGUGAAGCugcacgcCGGGUc- -3'
miRNA:   3'- -CGCGC--UCGCagCACUUCGu------GUCCAac -5'
29404 5' -54 NC_006151.1 + 19256 0.72 0.715228
Target:  5'- aGCGCGuggaAGCGgggcUCGUGgcGCGCGGGg-- -3'
miRNA:   3'- -CGCGC----UCGC----AGCACuuCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 20207 0.67 0.921574
Target:  5'- cGCGCGcAGCGcCGgGccGCGCAGGc-- -3'
miRNA:   3'- -CGCGC-UCGCaGCaCuuCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 21504 0.68 0.897055
Target:  5'- gGCGCGGGCGUCaccGggGCGggcuCGGGc-- -3'
miRNA:   3'- -CGCGCUCGCAGca-CuuCGU----GUCCaac -5'
29404 5' -54 NC_006151.1 + 21585 0.66 0.950999
Target:  5'- cGCGCGGG-GUCGaUGgcGUACGGcGUg- -3'
miRNA:   3'- -CGCGCUCgCAGC-ACuuCGUGUC-CAac -5'
29404 5' -54 NC_006151.1 + 23005 0.67 0.915811
Target:  5'- cGCGCGGGUG----GggGCGCGGGggUGg -3'
miRNA:   3'- -CGCGCUCGCagcaCuuCGUGUCCa-AC- -5'
29404 5' -54 NC_006151.1 + 24463 0.67 0.937388
Target:  5'- cGCGCGAGCaccUCG-GggGCGuuGGUc- -3'
miRNA:   3'- -CGCGCUCGc--AGCaCuuCGUguCCAac -5'
29404 5' -54 NC_006151.1 + 27307 0.67 0.921574
Target:  5'- gGCGUGGGgGUCGaggcGggGgACGGGggGc -3'
miRNA:   3'- -CGCGCUCgCAGCa---CuuCgUGUCCaaC- -5'
29404 5' -54 NC_006151.1 + 30611 0.66 0.942167
Target:  5'- aCGCGGGCGgucggCGUGcgcgcuGUGCGGGUg- -3'
miRNA:   3'- cGCGCUCGCa----GCACuu----CGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 34612 0.7 0.802056
Target:  5'- cGCGcCGAGCGc---GAGGCGCGGGUg- -3'
miRNA:   3'- -CGC-GCUCGCagcaCUUCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 42327 0.66 0.958879
Target:  5'- cGCGCGAagcuGCGacgggaGUGGAGCGgAGGg-- -3'
miRNA:   3'- -CGCGCU----CGCag----CACUUCGUgUCCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.