miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29404 5' -54 NC_006151.1 + 45090 0.67 0.932363
Target:  5'- cGCGCGguguGGCGUCGaUGggGUcgugccgugggACGGGa-- -3'
miRNA:   3'- -CGCGC----UCGCAGC-ACuuCG-----------UGUCCaac -5'
29404 5' -54 NC_006151.1 + 117423 0.67 0.931847
Target:  5'- aGCGUGAccaccguGcCGUUGggGAAGCGCGGGUc- -3'
miRNA:   3'- -CGCGCU-------C-GCAGCa-CUUCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 81849 0.67 0.927092
Target:  5'- gGCGCGAgagcaggcgcGCGUCGcucucGAcGCGCAGGa-- -3'
miRNA:   3'- -CGCGCU----------CGCAGCa----CUuCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 94756 0.67 0.925463
Target:  5'- cGCGCGgaaacaggcgccgcAGCGUCuccauGAGCGgCAGGUUGg -3'
miRNA:   3'- -CGCGC--------------UCGCAGcac--UUCGU-GUCCAAC- -5'
29404 5' -54 NC_006151.1 + 27307 0.67 0.921574
Target:  5'- gGCGUGGGgGUCGaggcGggGgACGGGggGc -3'
miRNA:   3'- -CGCGCUCgCAGCa---CuuCgUGUCCaaC- -5'
29404 5' -54 NC_006151.1 + 128224 0.67 0.921574
Target:  5'- uGCGaCGAGC-UCGUG-GGCGcCAGGUc- -3'
miRNA:   3'- -CGC-GCUCGcAGCACuUCGU-GUCCAac -5'
29404 5' -54 NC_006151.1 + 98931 0.67 0.921574
Target:  5'- uGCGCGAGCaguUCGccGAggcGGCGCGGGccgUGg -3'
miRNA:   3'- -CGCGCUCGc--AGCa-CU---UCGUGUCCa--AC- -5'
29404 5' -54 NC_006151.1 + 20207 0.67 0.921574
Target:  5'- cGCGCGcAGCGcCGgGccGCGCAGGc-- -3'
miRNA:   3'- -CGCGC-UCGCaGCaCuuCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 128277 0.67 0.921574
Target:  5'- cGCGCGcAGCGcCGc---GCGCAGGUa- -3'
miRNA:   3'- -CGCGC-UCGCaGCacuuCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 23005 0.67 0.915811
Target:  5'- cGCGCGGGUG----GggGCGCGGGggUGg -3'
miRNA:   3'- -CGCGCUCGCagcaCuuCGUGUCCa-AC- -5'
29404 5' -54 NC_006151.1 + 57747 0.67 0.915811
Target:  5'- gGCGCGccgcAGCcgcUCGUGGcccgGGCACAGGg-- -3'
miRNA:   3'- -CGCGC----UCGc--AGCACU----UCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 73275 0.67 0.915811
Target:  5'- uUGCcGGCGUugacCGUGcGGCGCAGGUa- -3'
miRNA:   3'- cGCGcUCGCA----GCACuUCGUGUCCAac -5'
29404 5' -54 NC_006151.1 + 115280 0.67 0.915811
Target:  5'- cGCGCGuacGCGUUGaUGAAGgCGCAG-UUGu -3'
miRNA:   3'- -CGCGCu--CGCAGC-ACUUC-GUGUCcAAC- -5'
29404 5' -54 NC_006151.1 + 44843 0.67 0.909801
Target:  5'- gGgGCGAGCGgggUCGUGGAGgGgGGGc-- -3'
miRNA:   3'- -CgCGCUCGC---AGCACUUCgUgUCCaac -5'
29404 5' -54 NC_006151.1 + 64351 0.68 0.903549
Target:  5'- aGCGCGGGcCGUCGgccccccAGCGCAcGGUc- -3'
miRNA:   3'- -CGCGCUC-GCAGCacu----UCGUGU-CCAac -5'
29404 5' -54 NC_006151.1 + 53191 0.68 0.903549
Target:  5'- uGCGCGAGagGUcCGUGuacucgcgcAGCGCGcGGUUGg -3'
miRNA:   3'- -CGCGCUCg-CA-GCACu--------UCGUGU-CCAAC- -5'
29404 5' -54 NC_006151.1 + 77090 0.68 0.903549
Target:  5'- cGUGCGAGC----UGAAGCGCGGGc-- -3'
miRNA:   3'- -CGCGCUCGcagcACUUCGUGUCCaac -5'
29404 5' -54 NC_006151.1 + 83367 0.68 0.903549
Target:  5'- cGCGCGGGCG-CGcaGgcGCcGCAGGUg- -3'
miRNA:   3'- -CGCGCUCGCaGCa-CuuCG-UGUCCAac -5'
29404 5' -54 NC_006151.1 + 76659 0.68 0.899681
Target:  5'- cGUGCGGGCG-CGUGugcgcggucgcugggGAGCAgGGGg-- -3'
miRNA:   3'- -CGCGCUCGCaGCAC---------------UUCGUgUCCaac -5'
29404 5' -54 NC_006151.1 + 21504 0.68 0.897055
Target:  5'- gGCGCGGGCGUCaccGggGCGggcuCGGGc-- -3'
miRNA:   3'- -CGCGCUCGCAGca-CuuCGU----GUCCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.