Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29404 | 5' | -54 | NC_006151.1 | + | 86627 | 0.68 | 0.890324 |
Target: 5'- cCGCGAGCG-CGUGuGGCACAu---- -3' miRNA: 3'- cGCGCUCGCaGCACuUCGUGUccaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 119120 | 0.68 | 0.890324 |
Target: 5'- cGCGCGgccGGCcUCGUgGggGCGCuGGUg- -3' miRNA: 3'- -CGCGC---UCGcAGCA-CuuCGUGuCCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 53353 | 0.68 | 0.890324 |
Target: 5'- cGCGCGccgcguacuGCGUCGUGucGUacGCGGcGUUGa -3' miRNA: 3'- -CGCGCu--------CGCAGCACuuCG--UGUC-CAAC- -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 89178 | 0.68 | 0.890324 |
Target: 5'- gGCGCGGGgGUCG-GggGCGgAGa--- -3' miRNA: 3'- -CGCGCUCgCAGCaCuuCGUgUCcaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 51762 | 0.68 | 0.890324 |
Target: 5'- uGCGCagguuGGCGcgCGUGAAGCACAcGGc-- -3' miRNA: 3'- -CGCGc----UCGCa-GCACUUCGUGU-CCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 44751 | 0.68 | 0.886172 |
Target: 5'- cGCGCGGGUGUUGUGuguGCgaucgcgcggagagaGCGGGg-- -3' miRNA: 3'- -CGCGCUCGCAGCACuu-CG---------------UGUCCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 18660 | 0.68 | 0.883358 |
Target: 5'- cGCcCGGGCGUCGUccgGccGUACGGGUUc -3' miRNA: 3'- -CGcGCUCGCAGCA---CuuCGUGUCCAAc -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 59521 | 0.68 | 0.876162 |
Target: 5'- cGCGCGcAGCGccgCGUGAGggcccagcGCGCGGGc-- -3' miRNA: 3'- -CGCGC-UCGCa--GCACUU--------CGUGUCCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 4226 | 0.68 | 0.876162 |
Target: 5'- gGCGCGGGCGggcgCGggcagccGGAGCggGCAGGg-- -3' miRNA: 3'- -CGCGCUCGCa---GCa------CUUCG--UGUCCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 58353 | 0.69 | 0.868742 |
Target: 5'- cGCGCGAagcugguccgccGCGUCGUGAucucgacggagAGCGCGGc--- -3' miRNA: 3'- -CGCGCU------------CGCAGCACU-----------UCGUGUCcaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 51239 | 0.69 | 0.868742 |
Target: 5'- gGCGCGAGCGcUCGgcgcAGCucCAGGUc- -3' miRNA: 3'- -CGCGCUCGC-AGCacu-UCGu-GUCCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 83183 | 0.69 | 0.867988 |
Target: 5'- cGCGCGGGCGgcagagcUCGUuGAGCGCgAGGc-- -3' miRNA: 3'- -CGCGCUCGC-------AGCAcUUCGUG-UCCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 16983 | 0.69 | 0.866473 |
Target: 5'- gGCGCcagGAGCgGUUGUGGacccgcgcgaacauGGCGCGGGUg- -3' miRNA: 3'- -CGCG---CUCG-CAGCACU--------------UCGUGUCCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 19020 | 0.69 | 0.861102 |
Target: 5'- cGCGCGccGGCGagGUGAAGCugcacgcCGGGUc- -3' miRNA: 3'- -CGCGC--UCGCagCACUUCGu------GUCCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 51131 | 0.69 | 0.861102 |
Target: 5'- cGCGCaGGGCGUCccGGAGCACGucGGg-- -3' miRNA: 3'- -CGCG-CUCGCAGcaCUUCGUGU--CCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 52600 | 0.69 | 0.861102 |
Target: 5'- uGCGCGuggacgaaGGCGUCGUc--GCGCAGGa-- -3' miRNA: 3'- -CGCGC--------UCGCAGCAcuuCGUGUCCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 123271 | 0.69 | 0.84519 |
Target: 5'- cGCGCGGGCaccGUCGUGGacgAGCGCGagacGGg-- -3' miRNA: 3'- -CGCGCUCG---CAGCACU---UCGUGU----CCaac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 78646 | 0.69 | 0.84519 |
Target: 5'- cGUGCGAGCuGguggaggCGgccGggGCGCGGGUg- -3' miRNA: 3'- -CGCGCUCG-Ca------GCa--CuuCGUGUCCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 53658 | 0.69 | 0.84519 |
Target: 5'- -gGCGGGC-UCGUGggGCACGcGUa- -3' miRNA: 3'- cgCGCUCGcAGCACuuCGUGUcCAac -5' |
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29404 | 5' | -54 | NC_006151.1 | + | 81381 | 0.69 | 0.836931 |
Target: 5'- aGCGCGAgccGCGcCGcGgcGCcCAGGUUGg -3' miRNA: 3'- -CGCGCU---CGCaGCaCuuCGuGUCCAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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