miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 82404 0.69 0.476242
Target:  5'- cCGcGCCcgaGGGCggCCCCGAgaggcgcgggcGCUCGCGCg -3'
miRNA:   3'- -GC-CGGua-CUCGa-GGGGCU-----------CGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 83260 0.71 0.372812
Target:  5'- uCGcGCCAgcGGCgCCCCGAGCUCagguaGCGCg -3'
miRNA:   3'- -GC-CGGUacUCGaGGGGCUCGAG-----CGUG- -5'
29405 3' -60.8 NC_006151.1 + 83327 0.69 0.470726
Target:  5'- gGGCCGUGagcAggcgcgcguccacguGCUCCCCG-GCgcgCGCGCg -3'
miRNA:   3'- gCCGGUAC---U---------------CGAGGGGCuCGa--GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 83429 0.71 0.372812
Target:  5'- -cGCCGggGGGCUCCCCGGGCagCGUg- -3'
miRNA:   3'- gcCGGUa-CUCGAGGGGCUCGa-GCGug -5'
29405 3' -60.8 NC_006151.1 + 85338 0.67 0.59203
Target:  5'- gGGCCAcagcGuGCUCgCCGcGCUgGCGCg -3'
miRNA:   3'- gCCGGUa---CuCGAGgGGCuCGAgCGUG- -5'
29405 3' -60.8 NC_006151.1 + 85730 0.66 0.681918
Target:  5'- aCGaGCgCAcgGAGCucacgcagcucuUCCCCGGGCUggcCGCGCu -3'
miRNA:   3'- -GC-CG-GUa-CUCG------------AGGGGCUCGA---GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 86577 0.66 0.64202
Target:  5'- uCGGCgc-GGGCgcgCUCCGAGCUgcuggCGCGCg -3'
miRNA:   3'- -GCCGguaCUCGa--GGGGCUCGA-----GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 86834 0.73 0.285743
Target:  5'- gCGGCCAUGgcAGCcCCgCCGAGCgcaGCGCc -3'
miRNA:   3'- -GCCGGUAC--UCGaGG-GGCUCGag-CGUG- -5'
29405 3' -60.8 NC_006151.1 + 89570 0.68 0.523371
Target:  5'- aGGCUgAUGGGCacgCCCaUGGGCUCGCcgGCg -3'
miRNA:   3'- gCCGG-UACUCGa--GGG-GCUCGAGCG--UG- -5'
29405 3' -60.8 NC_006151.1 + 94674 0.68 0.572182
Target:  5'- cCGGCgGgcAGCUCCCCGAagGC-CGCGg -3'
miRNA:   3'- -GCCGgUacUCGAGGGGCU--CGaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 95905 0.69 0.476242
Target:  5'- aCGGCCAUGAuGCcgcgcgugcagUCgCCCGAGggCGUGCg -3'
miRNA:   3'- -GCCGGUACU-CG-----------AG-GGGCUCgaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 96782 0.68 0.523371
Target:  5'- gGGagGUGAGCggagagUCCCGAGCcggggCGCGCg -3'
miRNA:   3'- gCCggUACUCGa-----GGGGCUCGa----GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 97144 0.68 0.523371
Target:  5'- gGGCCAgcgGcAGgUCCaCCGAGC-CGCAg -3'
miRNA:   3'- gCCGGUa--C-UCgAGG-GGCUCGaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 97434 0.72 0.325688
Target:  5'- cCGGCCAggaggaagcugaGGGCgUCgCCGAGCUCGgGCa -3'
miRNA:   3'- -GCCGGUa-----------CUCG-AGgGGCUCGAGCgUG- -5'
29405 3' -60.8 NC_006151.1 + 97716 0.74 0.242802
Target:  5'- uGGCCcagGAGCcCCCCGAGgaCGUGCa -3'
miRNA:   3'- gCCGGua-CUCGaGGGGCUCgaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 98342 0.68 0.572182
Target:  5'- gGGCCGcGAGacgCCCgCGGGCgUGCGCg -3'
miRNA:   3'- gCCGGUaCUCga-GGG-GCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 98502 0.67 0.601999
Target:  5'- aCGGCCccgcugcugGAGCUCCUgGGGgUCGUcaACg -3'
miRNA:   3'- -GCCGGua-------CUCGAGGGgCUCgAGCG--UG- -5'
29405 3' -60.8 NC_006151.1 + 99479 0.69 0.463422
Target:  5'- gCGGCgcugGGGCUCCCCGAGaagggcguggaGCACg -3'
miRNA:   3'- -GCCGgua-CUCGAGGGGCUCgag--------CGUG- -5'
29405 3' -60.8 NC_006151.1 + 99596 0.71 0.388971
Target:  5'- gCGGCC--GAGCgccgCgCCGGGCUgGCGCa -3'
miRNA:   3'- -GCCGGuaCUCGa---GgGGCUCGAgCGUG- -5'
29405 3' -60.8 NC_006151.1 + 102122 0.72 0.341889
Target:  5'- gGGCCG-GAGCcuguUCCCCGGGCgCGC-Cg -3'
miRNA:   3'- gCCGGUaCUCG----AGGGGCUCGaGCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.