miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 53412 0.69 0.513792
Target:  5'- aCGGCCGUGAGCaggugcCgCCCGAGCa-GCcCg -3'
miRNA:   3'- -GCCGGUACUCGa-----G-GGGCUCGagCGuG- -5'
29405 3' -60.8 NC_006151.1 + 53553 0.66 0.691815
Target:  5'- aGGCgcgcaaacuccuCGUG-GCUCCCCGcgAGCaCGCGCc -3'
miRNA:   3'- gCCG------------GUACuCGAGGGGC--UCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 54712 0.67 0.632007
Target:  5'- gGGCCA-GGGC-CUggacgagguggCCGAGCUCGC-Cg -3'
miRNA:   3'- gCCGGUaCUCGaGG-----------GGCUCGAGCGuG- -5'
29405 3' -60.8 NC_006151.1 + 56222 0.68 0.562316
Target:  5'- uGGCCcUGGuGCgCCCCGAggacccgacggaGUUCGCGCu -3'
miRNA:   3'- gCCGGuACU-CGaGGGGCU------------CGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 58890 0.66 0.681918
Target:  5'- aGGCCGUGuAGa-UCCCG-GCcgCGCACa -3'
miRNA:   3'- gCCGGUAC-UCgaGGGGCuCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 59701 0.67 0.619993
Target:  5'- aCGGCCAggcccacaaacuGCUCCCgcgucacgggguuggCGAGCgCGCGCa -3'
miRNA:   3'- -GCCGGUacu---------CGAGGG---------------GCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 61845 0.67 0.582089
Target:  5'- uGGCCGccccGGGgaCCCUGAuGCUCgGCGCg -3'
miRNA:   3'- gCCGGUa---CUCgaGGGGCU-CGAG-CGUG- -5'
29405 3' -60.8 NC_006151.1 + 63449 0.66 0.662016
Target:  5'- aGGCCAggucGAGCgUCCgGuucuGCUCGCAg -3'
miRNA:   3'- gCCGGUa---CUCGaGGGgCu---CGAGCGUg -5'
29405 3' -60.8 NC_006151.1 + 64557 0.66 0.661017
Target:  5'- aGGCCGUGgcgcgccAGCUCgaCGAGCaggUCGUGCa -3'
miRNA:   3'- gCCGGUAC-------UCGAGggGCUCG---AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 65221 0.67 0.601999
Target:  5'- gGGCCAUGAgGCuaaagUCCCCGAugacgGC-CGuCACg -3'
miRNA:   3'- gCCGGUACU-CG-----AGGGGCU-----CGaGC-GUG- -5'
29405 3' -60.8 NC_006151.1 + 66076 0.72 0.357116
Target:  5'- aCGGCCGccUGGGCUUCCacgCGGGCcugcagCGCGCg -3'
miRNA:   3'- -GCCGGU--ACUCGAGGG---GCUCGa-----GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 66567 0.66 0.691815
Target:  5'- -cGCCGUG-Ga--CCCGGcGCUCGCGCg -3'
miRNA:   3'- gcCGGUACuCgagGGGCU-CGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 69190 0.66 0.691815
Target:  5'- gCGcGCCAgGGGCUCgcuCCgGGGCcCGCGCc -3'
miRNA:   3'- -GC-CGGUaCUCGAG---GGgCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 69390 0.66 0.685882
Target:  5'- gCGGCCG-GGGgUCCUgGGGCgugagcaggagcucgUCGCGCc -3'
miRNA:   3'- -GCCGGUaCUCgAGGGgCUCG---------------AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 71003 0.74 0.266644
Target:  5'- uGGCCAucgUGGGCgccaugcgCCgCGAGCUCGCGg -3'
miRNA:   3'- gCCGGU---ACUCGa-------GGgGCUCGAGCGUg -5'
29405 3' -60.8 NC_006151.1 + 71784 0.72 0.334454
Target:  5'- gCGGCgG-GGGCUgCCgcaccagcuggCCGAGCUCGCGCg -3'
miRNA:   3'- -GCCGgUaCUCGA-GG-----------GGCUCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 76441 0.67 0.601999
Target:  5'- aGGCCAccGAGag-CCCGAGCUccaggaagCGCACg -3'
miRNA:   3'- gCCGGUa-CUCgagGGGCUCGA--------GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 78324 0.66 0.64202
Target:  5'- aGGCUGgacGAGCgCCCCGGGgCggGCGCg -3'
miRNA:   3'- gCCGGUa--CUCGaGGGGCUC-GagCGUG- -5'
29405 3' -60.8 NC_006151.1 + 81516 0.68 0.562316
Target:  5'- gCGGCCcgcGUGAGCUCggcggCCGcGGCggCGCGCu -3'
miRNA:   3'- -GCCGG---UACUCGAGg----GGC-UCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 82148 0.68 0.542728
Target:  5'- gGGCCcgGcGGCUCCagguCCGAGCcgaGCGCc -3'
miRNA:   3'- gCCGGuaC-UCGAGG----GGCUCGag-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.