miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 4137 0.66 0.691815
Target:  5'- uCGGCC--GGGCcggCCCCGGGgaUCGCGu -3'
miRNA:   3'- -GCCGGuaCUCGa--GGGGCUCg-AGCGUg -5'
29405 3' -60.8 NC_006151.1 + 69190 0.66 0.691815
Target:  5'- gCGcGCCAgGGGCUCgcuCCgGGGCcCGCGCc -3'
miRNA:   3'- -GC-CGGUaCUCGAG---GGgCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 120299 0.66 0.691815
Target:  5'- gGGUCAUGuuCUCgaCGGGCUCGgGCa -3'
miRNA:   3'- gCCGGUACucGAGggGCUCGAGCgUG- -5'
29405 3' -60.8 NC_006151.1 + 53553 0.66 0.691815
Target:  5'- aGGCgcgcaaacuccuCGUG-GCUCCCCGcgAGCaCGCGCc -3'
miRNA:   3'- gCCG------------GUACuCGAGGGGC--UCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 66567 0.66 0.691815
Target:  5'- -cGCCGUG-Ga--CCCGGcGCUCGCGCg -3'
miRNA:   3'- gcCGGUACuCgagGGGCU-CGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 2402 0.66 0.671982
Target:  5'- gGGCCGcgGAGCUcggcgaggCCCCGgcGGC-CGCAg -3'
miRNA:   3'- gCCGGUa-CUCGA--------GGGGC--UCGaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 43944 0.66 0.662016
Target:  5'- gGGCCggGGGCccUCCCCG-GC-CGCc- -3'
miRNA:   3'- gCCGGuaCUCG--AGGGGCuCGaGCGug -5'
29405 3' -60.8 NC_006151.1 + 78324 0.66 0.64202
Target:  5'- aGGCUGgacGAGCgCCCCGGGgCggGCGCg -3'
miRNA:   3'- gCCGGUa--CUCGaGGGGCUC-GagCGUG- -5'
29405 3' -60.8 NC_006151.1 + 136410 0.66 0.64202
Target:  5'- gCGGCUAcGcGCggggCCCCGcGGCggCGCACg -3'
miRNA:   3'- -GCCGGUaCuCGa---GGGGC-UCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 86577 0.66 0.64202
Target:  5'- uCGGCgc-GGGCgcgCUCCGAGCUgcuggCGCGCg -3'
miRNA:   3'- -GCCGguaCUCGa--GGGGCUCGA-----GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 130766 0.66 0.64202
Target:  5'- uGGCCAggaAGgUCCCguCGGGCaugUCGCGCg -3'
miRNA:   3'- gCCGGUac-UCgAGGG--GCUCG---AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 14130 0.66 0.652026
Target:  5'- aGGCgCG-GAGCgcgCCCCGAGCcgacgaggagcCGCGCc -3'
miRNA:   3'- gCCG-GUaCUCGa--GGGGCUCGa----------GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 136022 0.66 0.652026
Target:  5'- gCGGCCcUGAccauGgUCCUCGAGCaggUGCGCc -3'
miRNA:   3'- -GCCGGuACU----CgAGGGGCUCGa--GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 138187 0.66 0.652026
Target:  5'- uGGCCAUG-GCg-CCCGuGCUgcggcaccucgaCGCGCa -3'
miRNA:   3'- gCCGGUACuCGagGGGCuCGA------------GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 64557 0.66 0.661017
Target:  5'- aGGCCGUGgcgcgccAGCUCgaCGAGCaggUCGUGCa -3'
miRNA:   3'- gCCGGUAC-------UCGAGggGCUCG---AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 662 0.66 0.662016
Target:  5'- gCGGCCGgggcGGGCUCCgCGGa-UCGCAUc -3'
miRNA:   3'- -GCCGGUa---CUCGAGGgGCUcgAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 63449 0.66 0.662016
Target:  5'- aGGCCAggucGAGCgUCCgGuucuGCUCGCAg -3'
miRNA:   3'- gCCGGUa---CUCGaGGGgCu---CGAGCGUg -5'
29405 3' -60.8 NC_006151.1 + 107365 0.66 0.662016
Target:  5'- gCGGCCccgauccccGGGCUgccCCCCGAGUUgGCGg -3'
miRNA:   3'- -GCCGGua-------CUCGA---GGGGCUCGAgCGUg -5'
29405 3' -60.8 NC_006151.1 + 124147 0.66 0.662016
Target:  5'- gCGGCUGgagcccGAGCaggccugCCCCGAGUacUCGCAg -3'
miRNA:   3'- -GCCGGUa-----CUCGa------GGGGCUCG--AGCGUg -5'
29405 3' -60.8 NC_006151.1 + 130275 0.66 0.662016
Target:  5'- gCGGCCccGAGg-CCgCGGGCgCGCGCc -3'
miRNA:   3'- -GCCGGuaCUCgaGGgGCUCGaGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.