miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 18674 0.68 0.523371
Target:  5'- cCGGCCGUacGGGUUCCaCGGGCgCGCGg -3'
miRNA:   3'- -GCCGGUA--CUCGAGGgGCUCGaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 21898 0.67 0.621995
Target:  5'- cCGGagccaCCAUGAGCagCCCC-AGCUCGUc- -3'
miRNA:   3'- -GCC-----GGUACUCGa-GGGGcUCGAGCGug -5'
29405 3' -60.8 NC_006151.1 + 26943 0.71 0.372812
Target:  5'- gCGGUCGUaGAcgucgcGCUCgUUGAGCUCGCGCa -3'
miRNA:   3'- -GCCGGUA-CU------CGAGgGGCUCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 28825 0.68 0.533018
Target:  5'- cCGGCCAau-GCgggCCCCGGGgaCGCGg -3'
miRNA:   3'- -GCCGGUacuCGa--GGGGCUCgaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 31343 0.67 0.632007
Target:  5'- gGcGCCGUGGGCccgaCCCCG-GUcCGCGCc -3'
miRNA:   3'- gC-CGGUACUCGa---GGGGCuCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 33278 0.66 0.64202
Target:  5'- gCGGCCAUc-GCccgacccuUCCCCGGGgCgcgCGCGCg -3'
miRNA:   3'- -GCCGGUAcuCG--------AGGGGCUC-Ga--GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 37778 0.68 0.523371
Target:  5'- uGGCCAUGAGC-CgCCGcuacgaUCGCACc -3'
miRNA:   3'- gCCGGUACUCGaGgGGCucg---AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 37948 0.68 0.523371
Target:  5'- cCGGCCGcGuGC-CCCgCGAGCUgGCGg -3'
miRNA:   3'- -GCCGGUaCuCGaGGG-GCUCGAgCGUg -5'
29405 3' -60.8 NC_006151.1 + 38536 0.68 0.572182
Target:  5'- cCGGCCcgGAcccaGCg-CCCGAGCggCGCAa -3'
miRNA:   3'- -GCCGGuaCU----CGagGGGCUCGa-GCGUg -5'
29405 3' -60.8 NC_006151.1 + 39476 0.68 0.552496
Target:  5'- uGGCCcgG-GUgCCgCGAGCUcCGCGCg -3'
miRNA:   3'- gCCGGuaCuCGaGGgGCUCGA-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 39846 0.73 0.312862
Target:  5'- gCGGCCGccgGGGcCUCgCCGAGCUC-CGCg -3'
miRNA:   3'- -GCCGGUa--CUC-GAGgGGCUCGAGcGUG- -5'
29405 3' -60.8 NC_006151.1 + 43944 0.66 0.662016
Target:  5'- gGGCCggGGGCccUCCCCG-GC-CGCc- -3'
miRNA:   3'- gCCGGuaCUCG--AGGGGCuCGaGCGug -5'
29405 3' -60.8 NC_006151.1 + 45429 0.69 0.504285
Target:  5'- gGGCCG-GGGgUUCgCGGGCgUCGCACg -3'
miRNA:   3'- gCCGGUaCUCgAGGgGCUCG-AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 46121 0.68 0.572182
Target:  5'- aGGCCGaagggcaGGGCUCCggguCUGGGuCUCGCGCc -3'
miRNA:   3'- gCCGGUa------CUCGAGG----GGCUC-GAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 49644 0.71 0.388971
Target:  5'- gGGCCGUggaggaggucGAGCcCUCCGGGC-CGCGCc -3'
miRNA:   3'- gCCGGUA----------CUCGaGGGGCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 50446 0.72 0.341889
Target:  5'- gCGGCC-UGGGCaccgCCCgCGGGCgcUCGCGCc -3'
miRNA:   3'- -GCCGGuACUCGa---GGG-GCUCG--AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 50646 0.73 0.299065
Target:  5'- aCGGCCGcGGGCggaCCCGAGUcgUGCGCg -3'
miRNA:   3'- -GCCGGUaCUCGag-GGGCUCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 51206 0.7 0.440106
Target:  5'- uGGCCAgcaGGCcgCCCgCGGGCcCGCGCa -3'
miRNA:   3'- gCCGGUac-UCGa-GGG-GCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 51434 0.72 0.357116
Target:  5'- uGGCCAUGAcGCggaCgCCGcGCUCGUACu -3'
miRNA:   3'- gCCGGUACU-CGa--GgGGCuCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 53124 0.7 0.448996
Target:  5'- aGcGCCuucAUGAGCUCgCCGAaCUCGUACu -3'
miRNA:   3'- gC-CGG---UACUCGAGgGGCUcGAGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.