miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 66076 0.72 0.357116
Target:  5'- aCGGCCGccUGGGCUUCCacgCGGGCcugcagCGCGCg -3'
miRNA:   3'- -GCCGGU--ACUCGAGGG---GCUCGa-----GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 51434 0.72 0.357116
Target:  5'- uGGCCAUGAcGCggaCgCCGcGCUCGUACu -3'
miRNA:   3'- gCCGGUACU-CGa--GgGGCuCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 26943 0.71 0.372812
Target:  5'- gCGGUCGUaGAcgucgcGCUCgUUGAGCUCGCGCa -3'
miRNA:   3'- -GCCGGUA-CU------CGAGgGGCUCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 83260 0.71 0.372812
Target:  5'- uCGcGCCAgcGGCgCCCCGAGCUCagguaGCGCg -3'
miRNA:   3'- -GC-CGGUacUCGaGGGGCUCGAG-----CGUG- -5'
29405 3' -60.8 NC_006151.1 + 83429 0.71 0.372812
Target:  5'- -cGCCGggGGGCUCCCCGGGCagCGUg- -3'
miRNA:   3'- gcCGGUa-CUCGAGGGGCUCGa-GCGug -5'
29405 3' -60.8 NC_006151.1 + 119977 0.71 0.380834
Target:  5'- cCGGCgAcGAGCUUCCUGGcGCggCGCACg -3'
miRNA:   3'- -GCCGgUaCUCGAGGGGCU-CGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 99596 0.71 0.388971
Target:  5'- gCGGCC--GAGCgccgCgCCGGGCUgGCGCa -3'
miRNA:   3'- -GCCGGuaCUCGa---GgGGCUCGAgCGUG- -5'
29405 3' -60.8 NC_006151.1 + 49644 0.71 0.388971
Target:  5'- gGGCCGUggaggaggucGAGCcCUCCGGGC-CGCGCc -3'
miRNA:   3'- gCCGGUA----------CUCGaGGGGCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 137296 0.71 0.406424
Target:  5'- gCGGCCAUGcgcgGGUUCCgCCGcgcggugcucgacgcGCUCGCGCu -3'
miRNA:   3'- -GCCGGUAC----UCGAGG-GGCu--------------CGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 114872 0.7 0.420907
Target:  5'- uCGGCCAgGucgcugacgagcAGCUUCCCGGGCgcgaggcccgggCGCACg -3'
miRNA:   3'- -GCCGGUaC------------UCGAGGGGCUCGa-----------GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 13688 0.7 0.431317
Target:  5'- cCGGCCAaugcGGGCUCCCgGGacGCggGCACg -3'
miRNA:   3'- -GCCGGUa---CUCGAGGGgCU--CGagCGUG- -5'
29405 3' -60.8 NC_006151.1 + 3619 0.7 0.431317
Target:  5'- uGGCCGUG-GCcgUCCCCGcggagGGC-CGCGCc -3'
miRNA:   3'- gCCGGUACuCG--AGGGGC-----UCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 51206 0.7 0.440106
Target:  5'- uGGCCAgcaGGCcgCCCgCGGGCcCGCGCa -3'
miRNA:   3'- gCCGGUac-UCGa-GGG-GCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 53124 0.7 0.448996
Target:  5'- aGcGCCuucAUGAGCUCgCCGAaCUCGUACu -3'
miRNA:   3'- gC-CGG---UACUCGAGgGGCUcGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 99479 0.69 0.463422
Target:  5'- gCGGCgcugGGGCUCCCCGAGaagggcguggaGCACg -3'
miRNA:   3'- -GCCGgua-CUCGAGGGGCUCgag--------CGUG- -5'
29405 3' -60.8 NC_006151.1 + 83327 0.69 0.470726
Target:  5'- gGGCCGUGagcAggcgcgcguccacguGCUCCCCG-GCgcgCGCGCg -3'
miRNA:   3'- gCCGGUAC---U---------------CGAGGGGCuCGa--GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 82404 0.69 0.476242
Target:  5'- cCGcGCCcgaGGGCggCCCCGAgaggcgcgggcGCUCGCGCg -3'
miRNA:   3'- -GC-CGGua-CUCGa-GGGGCU-----------CGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 132843 0.69 0.476242
Target:  5'- aCGGCCAccacGGGCggccggCCCgGGGC-CGCGCc -3'
miRNA:   3'- -GCCGGUa---CUCGa-----GGGgCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 95905 0.69 0.476242
Target:  5'- aCGGCCAUGAuGCcgcgcgugcagUCgCCCGAGggCGUGCg -3'
miRNA:   3'- -GCCGGUACU-CG-----------AG-GGGCUCgaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 118898 0.69 0.476242
Target:  5'- gCGGCCGccGGCggCCUCGAGCgcCGCAUg -3'
miRNA:   3'- -GCCGGUacUCGa-GGGGCUCGa-GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.