miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 115460 1.09 0.000843
Target:  5'- gCGGCCAUGAGCUCCCCGAGCUCGCACa -3'
miRNA:   3'- -GCCGGUACUCGAGGGGCUCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 4910 0.79 0.112736
Target:  5'- gGGCCA-GGGCUCCCCGAGCggggugaGCAg -3'
miRNA:   3'- gCCGGUaCUCGAGGGGCUCGag-----CGUg -5'
29405 3' -60.8 NC_006151.1 + 2774 0.76 0.186299
Target:  5'- aCGGCCGcgcgGAGCUCgcggcaCCCGGGCcagCGCACg -3'
miRNA:   3'- -GCCGGUa---CUCGAG------GGGCUCGa--GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 112076 0.75 0.210394
Target:  5'- gGGCUGgugGAGCUCCCCGGG-UCGgGCg -3'
miRNA:   3'- gCCGGUa--CUCGAGGGGCUCgAGCgUG- -5'
29405 3' -60.8 NC_006151.1 + 7029 0.75 0.215524
Target:  5'- gCGGCCAUcucGGCUCgCCCGGGCcaaugggCGCGCg -3'
miRNA:   3'- -GCCGGUAc--UCGAG-GGGCUCGa------GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 97716 0.74 0.242802
Target:  5'- uGGCCcagGAGCcCCCCGAGgaCGUGCa -3'
miRNA:   3'- gCCGGua-CUCGaGGGGCUCgaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 139571 0.74 0.266644
Target:  5'- cCGGuCCGcGAGCg-CCUGGGCUCGCGCc -3'
miRNA:   3'- -GCC-GGUaCUCGagGGGCUCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 71003 0.74 0.266644
Target:  5'- uGGCCAucgUGGGCgccaugcgCCgCGAGCUCGCGg -3'
miRNA:   3'- gCCGGU---ACUCGa-------GGgGCUCGAGCGUg -5'
29405 3' -60.8 NC_006151.1 + 86834 0.73 0.285743
Target:  5'- gCGGCCAUGgcAGCcCCgCCGAGCgcaGCGCc -3'
miRNA:   3'- -GCCGGUAC--UCGaGG-GGCUCGag-CGUG- -5'
29405 3' -60.8 NC_006151.1 + 117562 0.73 0.285743
Target:  5'- gCGGCCAgaaGGGCUCCCCGcggaggaugGGC-CGCGu -3'
miRNA:   3'- -GCCGGUa--CUCGAGGGGC---------UCGaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 50646 0.73 0.299065
Target:  5'- aCGGCCGcGGGCggaCCCGAGUcgUGCGCg -3'
miRNA:   3'- -GCCGGUaCUCGag-GGGCUCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 3940 0.73 0.305904
Target:  5'- aGGCCGggcgcGGGCUCcgcgggCCCGGGC-CGCGCg -3'
miRNA:   3'- gCCGGUa----CUCGAG------GGGCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 133887 0.73 0.310762
Target:  5'- gCGGCCGUGGGCugauccaccgggacUCCCCuGGCggCGCAg -3'
miRNA:   3'- -GCCGGUACUCG--------------AGGGGcUCGa-GCGUg -5'
29405 3' -60.8 NC_006151.1 + 39846 0.73 0.312862
Target:  5'- gCGGCCGccgGGGcCUCgCCGAGCUC-CGCg -3'
miRNA:   3'- -GCCGGUa--CUC-GAGgGGCUCGAGcGUG- -5'
29405 3' -60.8 NC_006151.1 + 97434 0.72 0.325688
Target:  5'- cCGGCCAggaggaagcugaGGGCgUCgCCGAGCUCGgGCa -3'
miRNA:   3'- -GCCGGUa-----------CUCG-AGgGGCUCGAGCgUG- -5'
29405 3' -60.8 NC_006151.1 + 71784 0.72 0.334454
Target:  5'- gCGGCgG-GGGCUgCCgcaccagcuggCCGAGCUCGCGCg -3'
miRNA:   3'- -GCCGgUaCUCGA-GG-----------GGCUCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 139934 0.72 0.334454
Target:  5'- -cGCCGUGGGCcgccgUCCUCGAGUUCgGCGCc -3'
miRNA:   3'- gcCGGUACUCG-----AGGGGCUCGAG-CGUG- -5'
29405 3' -60.8 NC_006151.1 + 102122 0.72 0.341889
Target:  5'- gGGCCG-GAGCcuguUCCCCGGGCgCGC-Cg -3'
miRNA:   3'- gCCGGUaCUCG----AGGGGCUCGaGCGuG- -5'
29405 3' -60.8 NC_006151.1 + 17202 0.72 0.341889
Target:  5'- gGGCCGUGccccgGGC-CCCCGAGUUCagGUACu -3'
miRNA:   3'- gCCGGUAC-----UCGaGGGGCUCGAG--CGUG- -5'
29405 3' -60.8 NC_006151.1 + 50446 0.72 0.341889
Target:  5'- gCGGCC-UGGGCaccgCCCgCGGGCgcUCGCGCc -3'
miRNA:   3'- -GCCGGuACUCGa---GGG-GCUCG--AGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.