miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 662 0.66 0.662016
Target:  5'- gCGGCCGgggcGGGCUCCgCGGa-UCGCAUc -3'
miRNA:   3'- -GCCGGUa---CUCGAGGgGCUcgAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 139307 0.66 0.671982
Target:  5'- gCGGCgCGUGcuGCUCgaCCGuGCUCGC-Cg -3'
miRNA:   3'- -GCCG-GUACu-CGAGg-GGCuCGAGCGuG- -5'
29405 3' -60.8 NC_006151.1 + 130300 0.66 0.671982
Target:  5'- cCGGCCGacggcgcgGAGCgcgcgCgCCgcgcgcucgggGAGCUCGCGCg -3'
miRNA:   3'- -GCCGGUa-------CUCGa----GgGG-----------CUCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 2402 0.66 0.671982
Target:  5'- gGGCCGcgGAGCUcggcgaggCCCCGgcGGC-CGCAg -3'
miRNA:   3'- gCCGGUa-CUCGA--------GGGGC--UCGaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 43944 0.66 0.662016
Target:  5'- gGGCCggGGGCccUCCCCG-GC-CGCc- -3'
miRNA:   3'- gCCGGuaCUCG--AGGGGCuCGaGCGug -5'
29405 3' -60.8 NC_006151.1 + 130275 0.66 0.662016
Target:  5'- gCGGCCccGAGg-CCgCGGGCgCGCGCc -3'
miRNA:   3'- -GCCGGuaCUCgaGGgGCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 124147 0.66 0.662016
Target:  5'- gCGGCUGgagcccGAGCaggccugCCCCGAGUacUCGCAg -3'
miRNA:   3'- -GCCGGUa-----CUCGa------GGGGCUCG--AGCGUg -5'
29405 3' -60.8 NC_006151.1 + 107365 0.66 0.662016
Target:  5'- gCGGCCccgauccccGGGCUgccCCCCGAGUUgGCGg -3'
miRNA:   3'- -GCCGGua-------CUCGA---GGGGCUCGAgCGUg -5'
29405 3' -60.8 NC_006151.1 + 63449 0.66 0.662016
Target:  5'- aGGCCAggucGAGCgUCCgGuucuGCUCGCAg -3'
miRNA:   3'- gCCGGUa---CUCGaGGGgCu---CGAGCGUg -5'
29405 3' -60.8 NC_006151.1 + 129636 0.66 0.678941
Target:  5'- gCGuCCAUGAGCUCCgCGuAGUcguccagcgccgccUCGUACa -3'
miRNA:   3'- -GCcGGUACUCGAGGgGC-UCG--------------AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 134727 0.66 0.679934
Target:  5'- uGGCCuucGcGCgggacuuugucgCCCCGAGCagCGCGCg -3'
miRNA:   3'- gCCGGua-CuCGa-----------GGGGCUCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 58890 0.66 0.681918
Target:  5'- aGGCCGUGuAGa-UCCCG-GCcgCGCACa -3'
miRNA:   3'- gCCGGUAC-UCgaGGGGCuCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 66567 0.66 0.691815
Target:  5'- -cGCCGUG-Ga--CCCGGcGCUCGCGCg -3'
miRNA:   3'- gcCGGUACuCgagGGGCU-CGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 53553 0.66 0.691815
Target:  5'- aGGCgcgcaaacuccuCGUG-GCUCCCCGcgAGCaCGCGCc -3'
miRNA:   3'- gCCG------------GUACuCGAGGGGC--UCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 120299 0.66 0.691815
Target:  5'- gGGUCAUGuuCUCgaCGGGCUCGgGCa -3'
miRNA:   3'- gCCGGUACucGAGggGCUCGAGCgUG- -5'
29405 3' -60.8 NC_006151.1 + 69190 0.66 0.691815
Target:  5'- gCGcGCCAgGGGCUCgcuCCgGGGCcCGCGCc -3'
miRNA:   3'- -GC-CGGUaCUCGAG---GGgCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 4137 0.66 0.691815
Target:  5'- uCGGCC--GGGCcggCCCCGGGgaUCGCGu -3'
miRNA:   3'- -GCCGGuaCUCGa--GGGGCUCg-AGCGUg -5'
29405 3' -60.8 NC_006151.1 + 106465 0.66 0.691815
Target:  5'- gGaGCUGUGGGCgCCCUGGGC--GCACa -3'
miRNA:   3'- gC-CGGUACUCGaGGGGCUCGagCGUG- -5'
29405 3' -60.8 NC_006151.1 + 69390 0.66 0.685882
Target:  5'- gCGGCCG-GGGgUCCUgGGGCgugagcaggagcucgUCGCGCc -3'
miRNA:   3'- -GCCGGUaCUCgAGGGgCUCG---------------AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 85730 0.66 0.681918
Target:  5'- aCGaGCgCAcgGAGCucacgcagcucuUCCCCGGGCUggcCGCGCu -3'
miRNA:   3'- -GC-CG-GUa-CUCG------------AGGGGCUCGA---GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.