miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 662 0.66 0.662016
Target:  5'- gCGGCCGgggcGGGCUCCgCGGa-UCGCAUc -3'
miRNA:   3'- -GCCGGUa---CUCGAGGgGCUcgAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 2402 0.66 0.671982
Target:  5'- gGGCCGcgGAGCUcggcgaggCCCCGgcGGC-CGCAg -3'
miRNA:   3'- gCCGGUa-CUCGA--------GGGGC--UCGaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 2774 0.76 0.186299
Target:  5'- aCGGCCGcgcgGAGCUCgcggcaCCCGGGCcagCGCACg -3'
miRNA:   3'- -GCCGGUa---CUCGAG------GGGCUCGa--GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 3131 0.69 0.494855
Target:  5'- aGGCCGggcgcgGGGCgCCCucggCGGGCUCgGCGCa -3'
miRNA:   3'- gCCGGUa-----CUCGaGGG----GCUCGAG-CGUG- -5'
29405 3' -60.8 NC_006151.1 + 3547 0.66 0.695761
Target:  5'- gGGUCcgGAGCgggCCCGAguccgagggagcggcGCUUGCGCc -3'
miRNA:   3'- gCCGGuaCUCGag-GGGCU---------------CGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 3619 0.7 0.431317
Target:  5'- uGGCCGUG-GCcgUCCCCGcggagGGC-CGCGCc -3'
miRNA:   3'- gCCGGUACuCG--AGGGGC-----UCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 3940 0.73 0.305904
Target:  5'- aGGCCGggcgcGGGCUCcgcgggCCCGGGC-CGCGCg -3'
miRNA:   3'- gCCGGUa----CUCGAG------GGGCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 4137 0.66 0.691815
Target:  5'- uCGGCC--GGGCcggCCCCGGGgaUCGCGu -3'
miRNA:   3'- -GCCGGuaCUCGa--GGGGCUCg-AGCGUg -5'
29405 3' -60.8 NC_006151.1 + 4545 0.69 0.504285
Target:  5'- gCGGCCAUG-GCgUCCCCGAuguGCg-GCAg -3'
miRNA:   3'- -GCCGGUACuCG-AGGGGCU---CGagCGUg -5'
29405 3' -60.8 NC_006151.1 + 4910 0.79 0.112736
Target:  5'- gGGCCA-GGGCUCCCCGAGCggggugaGCAg -3'
miRNA:   3'- gCCGGUaCUCGAGGGGCUCGag-----CGUg -5'
29405 3' -60.8 NC_006151.1 + 6016 0.68 0.562316
Target:  5'- gCGGCCG-GGGa--CCCGGGCUCGUc- -3'
miRNA:   3'- -GCCGGUaCUCgagGGGCUCGAGCGug -5'
29405 3' -60.8 NC_006151.1 + 7029 0.75 0.215524
Target:  5'- gCGGCCAUcucGGCUCgCCCGGGCcaaugggCGCGCg -3'
miRNA:   3'- -GCCGGUAc--UCGAG-GGGCUCGa------GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 8314 0.68 0.542728
Target:  5'- -cGCCccGAGC-CCCCGGGg-CGCGCg -3'
miRNA:   3'- gcCGGuaCUCGaGGGGCUCgaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 10998 0.67 0.61199
Target:  5'- gGGCCG-GGGg-CCCCG-GCUCGCcCg -3'
miRNA:   3'- gCCGGUaCUCgaGGGGCuCGAGCGuG- -5'
29405 3' -60.8 NC_006151.1 + 11470 0.67 0.61199
Target:  5'- gGGCCAUcGGCUggaacaCCCUGAGCcuUCGCu- -3'
miRNA:   3'- gCCGGUAcUCGA------GGGGCUCG--AGCGug -5'
29405 3' -60.8 NC_006151.1 + 13407 0.68 0.572182
Target:  5'- cCGGCCAauggggGAGCcgggcccgcgUCCCCGGGgCcCGCAUu -3'
miRNA:   3'- -GCCGGUa-----CUCG----------AGGGGCUC-GaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 13688 0.7 0.431317
Target:  5'- cCGGCCAaugcGGGCUCCCgGGacGCggGCACg -3'
miRNA:   3'- -GCCGGUa---CUCGAGGGgCU--CGagCGUG- -5'
29405 3' -60.8 NC_006151.1 + 14130 0.66 0.652026
Target:  5'- aGGCgCG-GAGCgcgCCCCGAGCcgacgaggagcCGCGCc -3'
miRNA:   3'- gCCG-GUaCUCGa--GGGGCUCGa----------GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 17202 0.72 0.341889
Target:  5'- gGGCCGUGccccgGGC-CCCCGAGUUCagGUACu -3'
miRNA:   3'- gCCGGUAC-----UCGaGGGGCUCGAG--CGUG- -5'
29405 3' -60.8 NC_006151.1 + 17282 0.69 0.485506
Target:  5'- gGGCUgauacggagGGGCUCCCCGGGCUuCGaGCc -3'
miRNA:   3'- gCCGGua-------CUCGAGGGGCUCGA-GCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.