miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 142179 0.67 0.61199
Target:  5'- --uCCAUGGGCUCCgacUCGGGCUCG-ACg -3'
miRNA:   3'- gccGGUACUCGAGG---GGCUCGAGCgUG- -5'
29405 3' -60.8 NC_006151.1 + 141824 0.69 0.485506
Target:  5'- gGGCCGguucgGGGgUCCCgCGcucgacgcgaggGGCUCGCGCc -3'
miRNA:   3'- gCCGGUa----CUCgAGGG-GC------------UCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 141647 0.67 0.601999
Target:  5'- gCGGCgCGgcgGGGC-CCCgCGGGCUCGUu- -3'
miRNA:   3'- -GCCG-GUa--CUCGaGGG-GCUCGAGCGug -5'
29405 3' -60.8 NC_006151.1 + 139934 0.72 0.334454
Target:  5'- -cGCCGUGGGCcgccgUCCUCGAGUUCgGCGCc -3'
miRNA:   3'- gcCGGUACUCG-----AGGGGCUCGAG-CGUG- -5'
29405 3' -60.8 NC_006151.1 + 139571 0.74 0.266644
Target:  5'- cCGGuCCGcGAGCg-CCUGGGCUCGCGCc -3'
miRNA:   3'- -GCC-GGUaCUCGagGGGCUCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 139307 0.66 0.671982
Target:  5'- gCGGCgCGUGcuGCUCgaCCGuGCUCGC-Cg -3'
miRNA:   3'- -GCCG-GUACu-CGAGg-GGCuCGAGCGuG- -5'
29405 3' -60.8 NC_006151.1 + 138187 0.66 0.652026
Target:  5'- uGGCCAUG-GCg-CCCGuGCUgcggcaccucgaCGCGCa -3'
miRNA:   3'- gCCGGUACuCGagGGGCuCGA------------GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 137296 0.71 0.406424
Target:  5'- gCGGCCAUGcgcgGGUUCCgCCGcgcggugcucgacgcGCUCGCGCu -3'
miRNA:   3'- -GCCGGUAC----UCGAGG-GGCu--------------CGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 136768 0.67 0.582089
Target:  5'- cCGGCCAUGGGCg--CCG-GCUacguggaggacCGCACg -3'
miRNA:   3'- -GCCGGUACUCGaggGGCuCGA-----------GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 136410 0.66 0.64202
Target:  5'- gCGGCUAcGcGCggggCCCCGcGGCggCGCACg -3'
miRNA:   3'- -GCCGGUaCuCGa---GGGGC-UCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 136022 0.66 0.652026
Target:  5'- gCGGCCcUGAccauGgUCCUCGAGCaggUGCGCc -3'
miRNA:   3'- -GCCGGuACU----CgAGGGGCUCGa--GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 134970 0.68 0.552496
Target:  5'- uCGGCCAgccuccGGGcCUUCUCGGGCggGCGCg -3'
miRNA:   3'- -GCCGGUa-----CUC-GAGGGGCUCGagCGUG- -5'
29405 3' -60.8 NC_006151.1 + 134727 0.66 0.679934
Target:  5'- uGGCCuucGcGCgggacuuugucgCCCCGAGCagCGCGCg -3'
miRNA:   3'- gCCGGua-CuCGa-----------GGGGCUCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 133887 0.73 0.310762
Target:  5'- gCGGCCGUGGGCugauccaccgggacUCCCCuGGCggCGCAg -3'
miRNA:   3'- -GCCGGUACUCG--------------AGGGGcUCGa-GCGUg -5'
29405 3' -60.8 NC_006151.1 + 132843 0.69 0.476242
Target:  5'- aCGGCCAccacGGGCggccggCCCgGGGC-CGCGCc -3'
miRNA:   3'- -GCCGGUa---CUCGa-----GGGgCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 132577 0.67 0.59203
Target:  5'- aCGGCCGggacucgcggcaUGGGCUccgCCCCGGGCacccccaggUCGaCGCu -3'
miRNA:   3'- -GCCGGU------------ACUCGA---GGGGCUCG---------AGC-GUG- -5'
29405 3' -60.8 NC_006151.1 + 130766 0.66 0.64202
Target:  5'- uGGCCAggaAGgUCCCguCGGGCaugUCGCGCg -3'
miRNA:   3'- gCCGGUac-UCgAGGG--GCUCG---AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 130300 0.66 0.671982
Target:  5'- cCGGCCGacggcgcgGAGCgcgcgCgCCgcgcgcucgggGAGCUCGCGCg -3'
miRNA:   3'- -GCCGGUa-------CUCGa----GgGG-----------CUCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 130275 0.66 0.662016
Target:  5'- gCGGCCccGAGg-CCgCGGGCgCGCGCc -3'
miRNA:   3'- -GCCGGuaCUCgaGGgGCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 129636 0.66 0.678941
Target:  5'- gCGuCCAUGAGCUCCgCGuAGUcguccagcgccgccUCGUACa -3'
miRNA:   3'- -GCcGGUACUCGAGGgGC-UCG--------------AGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.