miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 129540 0.67 0.59203
Target:  5'- gGGCCcgGGGCcgCCgucaaCCGcAGCUgGCGCa -3'
miRNA:   3'- gCCGGuaCUCGa-GG-----GGC-UCGAgCGUG- -5'
29405 3' -60.8 NC_006151.1 + 124147 0.66 0.662016
Target:  5'- gCGGCUGgagcccGAGCaggccugCCCCGAGUacUCGCAg -3'
miRNA:   3'- -GCCGGUa-----CUCGa------GGGGCUCG--AGCGUg -5'
29405 3' -60.8 NC_006151.1 + 123917 0.67 0.582089
Target:  5'- gCGGCCGUGAcGCgggccgCCUCGGcCUCGC-Cg -3'
miRNA:   3'- -GCCGGUACU-CGa-----GGGGCUcGAGCGuG- -5'
29405 3' -60.8 NC_006151.1 + 123373 0.69 0.504285
Target:  5'- cCGGCCGUcacgcgcaAGUUCUUCGAGCUCGUcaACg -3'
miRNA:   3'- -GCCGGUAc-------UCGAGGGGCUCGAGCG--UG- -5'
29405 3' -60.8 NC_006151.1 + 122693 0.68 0.53205
Target:  5'- gCGGCCGUGGagcucgcGCUCUUCGGGCggcggcccgaGCACu -3'
miRNA:   3'- -GCCGGUACU-------CGAGGGGCUCGag--------CGUG- -5'
29405 3' -60.8 NC_006151.1 + 122141 0.67 0.582089
Target:  5'- uCGGCCGUggacGAGUUCCUCGcg--CGCACg -3'
miRNA:   3'- -GCCGGUA----CUCGAGGGGCucgaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 121182 0.67 0.632007
Target:  5'- gCGGCCGUGcuGCacgcgCUCgGGGCgCGCACg -3'
miRNA:   3'- -GCCGGUACu-CGa----GGGgCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 121051 0.68 0.533018
Target:  5'- uGGCCugcccgcgcGUGGGCUUCaCGuGCUCGCAg -3'
miRNA:   3'- gCCGG---------UACUCGAGGgGCuCGAGCGUg -5'
29405 3' -60.8 NC_006151.1 + 120299 0.66 0.691815
Target:  5'- gGGUCAUGuuCUCgaCGGGCUCGgGCa -3'
miRNA:   3'- gCCGGUACucGAGggGCUCGAGCgUG- -5'
29405 3' -60.8 NC_006151.1 + 119977 0.71 0.380834
Target:  5'- cCGGCgAcGAGCUUCCUGGcGCggCGCACg -3'
miRNA:   3'- -GCCGgUaCUCGAGGGGCU-CGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 118898 0.69 0.476242
Target:  5'- gCGGCCGccGGCggCCUCGAGCgcCGCAUg -3'
miRNA:   3'- -GCCGGUacUCGa-GGGGCUCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 117562 0.73 0.285743
Target:  5'- gCGGCCAgaaGGGCUCCCCGcggaggaugGGC-CGCGu -3'
miRNA:   3'- -GCCGGUa--CUCGAGGGGC---------UCGaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 115460 1.09 0.000843
Target:  5'- gCGGCCAUGAGCUCCCCGAGCUCGCACa -3'
miRNA:   3'- -GCCGGUACUCGAGGGGCUCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 114872 0.7 0.420907
Target:  5'- uCGGCCAgGucgcugacgagcAGCUUCCCGGGCgcgaggcccgggCGCACg -3'
miRNA:   3'- -GCCGGUaC------------UCGAGGGGCUCGa-----------GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 114242 0.67 0.596015
Target:  5'- uGGCCGcgcgggaccccucgGAGCgcgCCCuCGAggagguGCUCGCGCa -3'
miRNA:   3'- gCCGGUa-------------CUCGa--GGG-GCU------CGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 112076 0.75 0.210394
Target:  5'- gGGCUGgugGAGCUCCCCGGG-UCGgGCg -3'
miRNA:   3'- gCCGGUa--CUCGAGGGGCUCgAGCgUG- -5'
29405 3' -60.8 NC_006151.1 + 107365 0.66 0.662016
Target:  5'- gCGGCCccgauccccGGGCUgccCCCCGAGUUgGCGg -3'
miRNA:   3'- -GCCGGua-------CUCGA---GGGGCUCGAgCGUg -5'
29405 3' -60.8 NC_006151.1 + 106880 0.68 0.546629
Target:  5'- uGGCCGUGAcGCUgugcgaccugcgcgaCCCCGcGCU-GCACc -3'
miRNA:   3'- gCCGGUACU-CGA---------------GGGGCuCGAgCGUG- -5'
29405 3' -60.8 NC_006151.1 + 106465 0.66 0.691815
Target:  5'- gGaGCUGUGGGCgCCCUGGGC--GCACa -3'
miRNA:   3'- gC-CGGUACUCGaGGGGCUCGagCGUG- -5'
29405 3' -60.8 NC_006151.1 + 105268 0.68 0.542728
Target:  5'- aGGCCuggGAGgaCUuuGGGCgcgCGCGCg -3'
miRNA:   3'- gCCGGua-CUCgaGGggCUCGa--GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.