miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 69190 0.66 0.691815
Target:  5'- gCGcGCCAgGGGCUCgcuCCgGGGCcCGCGCc -3'
miRNA:   3'- -GC-CGGUaCUCGAG---GGgCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 4137 0.66 0.691815
Target:  5'- uCGGCC--GGGCcggCCCCGGGgaUCGCGu -3'
miRNA:   3'- -GCCGGuaCUCGa--GGGGCUCg-AGCGUg -5'
29405 3' -60.8 NC_006151.1 + 106465 0.66 0.691815
Target:  5'- gGaGCUGUGGGCgCCCUGGGC--GCACa -3'
miRNA:   3'- gC-CGGUACUCGaGGGGCUCGagCGUG- -5'
29405 3' -60.8 NC_006151.1 + 69390 0.66 0.685882
Target:  5'- gCGGCCG-GGGgUCCUgGGGCgugagcaggagcucgUCGCGCc -3'
miRNA:   3'- -GCCGGUaCUCgAGGGgCUCG---------------AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 130300 0.66 0.671982
Target:  5'- cCGGCCGacggcgcgGAGCgcgcgCgCCgcgcgcucgggGAGCUCGCGCg -3'
miRNA:   3'- -GCCGGUa-------CUCGa----GgGG-----------CUCGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 139307 0.66 0.671982
Target:  5'- gCGGCgCGUGcuGCUCgaCCGuGCUCGC-Cg -3'
miRNA:   3'- -GCCG-GUACu-CGAGg-GGCuCGAGCGuG- -5'
29405 3' -60.8 NC_006151.1 + 129636 0.66 0.678941
Target:  5'- gCGuCCAUGAGCUCCgCGuAGUcguccagcgccgccUCGUACa -3'
miRNA:   3'- -GCcGGUACUCGAGGgGC-UCG--------------AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 134727 0.66 0.679934
Target:  5'- uGGCCuucGcGCgggacuuugucgCCCCGAGCagCGCGCg -3'
miRNA:   3'- gCCGGua-CuCGa-----------GGGGCUCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 58890 0.66 0.681918
Target:  5'- aGGCCGUGuAGa-UCCCG-GCcgCGCACa -3'
miRNA:   3'- gCCGGUAC-UCgaGGGGCuCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 85730 0.66 0.681918
Target:  5'- aCGaGCgCAcgGAGCucacgcagcucuUCCCCGGGCUggcCGCGCu -3'
miRNA:   3'- -GC-CG-GUa-CUCG------------AGGGGCUCGA---GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 98502 0.67 0.601999
Target:  5'- aCGGCCccgcugcugGAGCUCCUgGGGgUCGUcaACg -3'
miRNA:   3'- -GCCGGua-------CUCGAGGGgCUCgAGCG--UG- -5'
29405 3' -60.8 NC_006151.1 + 141647 0.67 0.601999
Target:  5'- gCGGCgCGgcgGGGC-CCCgCGGGCUCGUu- -3'
miRNA:   3'- -GCCG-GUa--CUCGaGGG-GCUCGAGCGug -5'
29405 3' -60.8 NC_006151.1 + 11470 0.67 0.61199
Target:  5'- gGGCCAUcGGCUggaacaCCCUGAGCcuUCGCu- -3'
miRNA:   3'- gCCGGUAcUCGA------GGGGCUCG--AGCGug -5'
29405 3' -60.8 NC_006151.1 + 10998 0.67 0.61199
Target:  5'- gGGCCG-GGGg-CCCCG-GCUCGCcCg -3'
miRNA:   3'- gCCGGUaCUCgaGGGGCuCGAGCGuG- -5'
29405 3' -60.8 NC_006151.1 + 59701 0.67 0.619993
Target:  5'- aCGGCCAggcccacaaacuGCUCCCgcgucacgggguuggCGAGCgCGCGCa -3'
miRNA:   3'- -GCCGGUacu---------CGAGGG---------------GCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 142179 0.67 0.61199
Target:  5'- --uCCAUGGGCUCCgacUCGGGCUCG-ACg -3'
miRNA:   3'- gccGGUACUCGAGG---GGCUCGAGCgUG- -5'
29405 3' -60.8 NC_006151.1 + 21898 0.67 0.621995
Target:  5'- cCGGagccaCCAUGAGCagCCCC-AGCUCGUc- -3'
miRNA:   3'- -GCC-----GGUACUCGa-GGGGcUCGAGCGug -5'
29405 3' -60.8 NC_006151.1 + 121182 0.67 0.632007
Target:  5'- gCGGCCGUGcuGCacgcgCUCgGGGCgCGCACg -3'
miRNA:   3'- -GCCGGUACu-CGa----GGGgCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 31343 0.67 0.632007
Target:  5'- gGcGCCGUGGGCccgaCCCCG-GUcCGCGCc -3'
miRNA:   3'- gC-CGGUACUCGa---GGGGCuCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 76441 0.67 0.601999
Target:  5'- aGGCCAccGAGag-CCCGAGCUccaggaagCGCACg -3'
miRNA:   3'- gCCGGUa-CUCgagGGGCUCGA--------GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.