miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 43944 0.66 0.662016
Target:  5'- gGGCCggGGGCccUCCCCG-GC-CGCc- -3'
miRNA:   3'- gCCGGuaCUCG--AGGGGCuCGaGCGug -5'
29405 3' -60.8 NC_006151.1 + 64557 0.66 0.661017
Target:  5'- aGGCCGUGgcgcgccAGCUCgaCGAGCaggUCGUGCa -3'
miRNA:   3'- gCCGGUAC-------UCGAGggGCUCG---AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 138187 0.66 0.652026
Target:  5'- uGGCCAUG-GCg-CCCGuGCUgcggcaccucgaCGCGCa -3'
miRNA:   3'- gCCGGUACuCGagGGGCuCGA------------GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 136022 0.66 0.652026
Target:  5'- gCGGCCcUGAccauGgUCCUCGAGCaggUGCGCc -3'
miRNA:   3'- -GCCGGuACU----CgAGGGGCUCGa--GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 14130 0.66 0.652026
Target:  5'- aGGCgCG-GAGCgcgCCCCGAGCcgacgaggagcCGCGCc -3'
miRNA:   3'- gCCG-GUaCUCGa--GGGGCUCGa----------GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 33278 0.66 0.64202
Target:  5'- gCGGCCAUc-GCccgacccuUCCCCGGGgCgcgCGCGCg -3'
miRNA:   3'- -GCCGGUAcuCG--------AGGGGCUC-Ga--GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 78324 0.66 0.64202
Target:  5'- aGGCUGgacGAGCgCCCCGGGgCggGCGCg -3'
miRNA:   3'- gCCGGUa--CUCGaGGGGCUC-GagCGUG- -5'
29405 3' -60.8 NC_006151.1 + 136410 0.66 0.64202
Target:  5'- gCGGCUAcGcGCggggCCCCGcGGCggCGCACg -3'
miRNA:   3'- -GCCGGUaCuCGa---GGGGC-UCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 86577 0.66 0.64202
Target:  5'- uCGGCgc-GGGCgcgCUCCGAGCUgcuggCGCGCg -3'
miRNA:   3'- -GCCGguaCUCGa--GGGGCUCGA-----GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 130766 0.66 0.64202
Target:  5'- uGGCCAggaAGgUCCCguCGGGCaugUCGCGCg -3'
miRNA:   3'- gCCGGUac-UCgAGGG--GCUCG---AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 54712 0.67 0.632007
Target:  5'- gGGCCA-GGGC-CUggacgagguggCCGAGCUCGC-Cg -3'
miRNA:   3'- gCCGGUaCUCGaGG-----------GGCUCGAGCGuG- -5'
29405 3' -60.8 NC_006151.1 + 31343 0.67 0.632007
Target:  5'- gGcGCCGUGGGCccgaCCCCG-GUcCGCGCc -3'
miRNA:   3'- gC-CGGUACUCGa---GGGGCuCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 121182 0.67 0.632007
Target:  5'- gCGGCCGUGcuGCacgcgCUCgGGGCgCGCACg -3'
miRNA:   3'- -GCCGGUACu-CGa----GGGgCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 21898 0.67 0.621995
Target:  5'- cCGGagccaCCAUGAGCagCCCC-AGCUCGUc- -3'
miRNA:   3'- -GCC-----GGUACUCGa-GGGGcUCGAGCGug -5'
29405 3' -60.8 NC_006151.1 + 59701 0.67 0.619993
Target:  5'- aCGGCCAggcccacaaacuGCUCCCgcgucacgggguuggCGAGCgCGCGCa -3'
miRNA:   3'- -GCCGGUacu---------CGAGGG---------------GCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 11470 0.67 0.61199
Target:  5'- gGGCCAUcGGCUggaacaCCCUGAGCcuUCGCu- -3'
miRNA:   3'- gCCGGUAcUCGA------GGGGCUCG--AGCGug -5'
29405 3' -60.8 NC_006151.1 + 10998 0.67 0.61199
Target:  5'- gGGCCG-GGGg-CCCCG-GCUCGCcCg -3'
miRNA:   3'- gCCGGUaCUCgaGGGGCuCGAGCGuG- -5'
29405 3' -60.8 NC_006151.1 + 142179 0.67 0.61199
Target:  5'- --uCCAUGGGCUCCgacUCGGGCUCG-ACg -3'
miRNA:   3'- gccGGUACUCGAGG---GGCUCGAGCgUG- -5'
29405 3' -60.8 NC_006151.1 + 98502 0.67 0.601999
Target:  5'- aCGGCCccgcugcugGAGCUCCUgGGGgUCGUcaACg -3'
miRNA:   3'- -GCCGGua-------CUCGAGGGgCUCgAGCG--UG- -5'
29405 3' -60.8 NC_006151.1 + 76441 0.67 0.601999
Target:  5'- aGGCCAccGAGag-CCCGAGCUccaggaagCGCACg -3'
miRNA:   3'- gCCGGUa-CUCgagGGGCUCGA--------GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.