miRNA display CGI


Results 41 - 60 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 98502 0.67 0.601999
Target:  5'- aCGGCCccgcugcugGAGCUCCUgGGGgUCGUcaACg -3'
miRNA:   3'- -GCCGGua-------CUCGAGGGgCUCgAGCG--UG- -5'
29405 3' -60.8 NC_006151.1 + 141647 0.67 0.601999
Target:  5'- gCGGCgCGgcgGGGC-CCCgCGGGCUCGUu- -3'
miRNA:   3'- -GCCG-GUa--CUCGaGGG-GCUCGAGCGug -5'
29405 3' -60.8 NC_006151.1 + 114242 0.67 0.596015
Target:  5'- uGGCCGcgcgggaccccucgGAGCgcgCCCuCGAggagguGCUCGCGCa -3'
miRNA:   3'- gCCGGUa-------------CUCGa--GGG-GCU------CGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 132577 0.67 0.59203
Target:  5'- aCGGCCGggacucgcggcaUGGGCUccgCCCCGGGCacccccaggUCGaCGCu -3'
miRNA:   3'- -GCCGGU------------ACUCGA---GGGGCUCG---------AGC-GUG- -5'
29405 3' -60.8 NC_006151.1 + 129540 0.67 0.59203
Target:  5'- gGGCCcgGGGCcgCCgucaaCCGcAGCUgGCGCa -3'
miRNA:   3'- gCCGGuaCUCGa-GG-----GGC-UCGAgCGUG- -5'
29405 3' -60.8 NC_006151.1 + 85338 0.67 0.59203
Target:  5'- gGGCCAcagcGuGCUCgCCGcGCUgGCGCg -3'
miRNA:   3'- gCCGGUa---CuCGAGgGGCuCGAgCGUG- -5'
29405 3' -60.8 NC_006151.1 + 61845 0.67 0.582089
Target:  5'- uGGCCGccccGGGgaCCCUGAuGCUCgGCGCg -3'
miRNA:   3'- gCCGGUa---CUCgaGGGGCU-CGAG-CGUG- -5'
29405 3' -60.8 NC_006151.1 + 123917 0.67 0.582089
Target:  5'- gCGGCCGUGAcGCgggccgCCUCGGcCUCGC-Cg -3'
miRNA:   3'- -GCCGGUACU-CGa-----GGGGCUcGAGCGuG- -5'
29405 3' -60.8 NC_006151.1 + 136768 0.67 0.582089
Target:  5'- cCGGCCAUGGGCg--CCG-GCUacguggaggacCGCACg -3'
miRNA:   3'- -GCCGGUACUCGaggGGCuCGA-----------GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 122141 0.67 0.582089
Target:  5'- uCGGCCGUggacGAGUUCCUCGcg--CGCACg -3'
miRNA:   3'- -GCCGGUA----CUCGAGGGGCucgaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 46121 0.68 0.572182
Target:  5'- aGGCCGaagggcaGGGCUCCggguCUGGGuCUCGCGCc -3'
miRNA:   3'- gCCGGUa------CUCGAGG----GGCUC-GAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 98342 0.68 0.572182
Target:  5'- gGGCCGcGAGacgCCCgCGGGCgUGCGCg -3'
miRNA:   3'- gCCGGUaCUCga-GGG-GCUCGaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 105154 0.68 0.572182
Target:  5'- aCGGCCGcGGGC-CCauggaCGAGUUCGC-Cg -3'
miRNA:   3'- -GCCGGUaCUCGaGGg----GCUCGAGCGuG- -5'
29405 3' -60.8 NC_006151.1 + 13407 0.68 0.572182
Target:  5'- cCGGCCAauggggGAGCcgggcccgcgUCCCCGGGgCcCGCAUu -3'
miRNA:   3'- -GCCGGUa-----CUCG----------AGGGGCUC-GaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 94674 0.68 0.572182
Target:  5'- cCGGCgGgcAGCUCCCCGAagGC-CGCGg -3'
miRNA:   3'- -GCCGgUacUCGAGGGGCU--CGaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 38536 0.68 0.572182
Target:  5'- cCGGCCcgGAcccaGCg-CCCGAGCggCGCAa -3'
miRNA:   3'- -GCCGGuaCU----CGagGGGCUCGa-GCGUg -5'
29405 3' -60.8 NC_006151.1 + 103831 0.68 0.562316
Target:  5'- gCGGCCGUgGAGaUgCUCGGGCggcugCGCGCg -3'
miRNA:   3'- -GCCGGUA-CUCgAgGGGCUCGa----GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 81516 0.68 0.562316
Target:  5'- gCGGCCcgcGUGAGCUCggcggCCGcGGCggCGCGCu -3'
miRNA:   3'- -GCCGG---UACUCGAGg----GGC-UCGa-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 56222 0.68 0.562316
Target:  5'- uGGCCcUGGuGCgCCCCGAggacccgacggaGUUCGCGCu -3'
miRNA:   3'- gCCGGuACU-CGaGGGGCU------------CGAGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 6016 0.68 0.562316
Target:  5'- gCGGCCG-GGGa--CCCGGGCUCGUc- -3'
miRNA:   3'- -GCCGGUaCUCgagGGGCUCGAGCGug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.