miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 3' -60.8 NC_006151.1 + 39476 0.68 0.552496
Target:  5'- uGGCCcgG-GUgCCgCGAGCUcCGCGCg -3'
miRNA:   3'- gCCGGuaCuCGaGGgGCUCGA-GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 134970 0.68 0.552496
Target:  5'- uCGGCCAgccuccGGGcCUUCUCGGGCggGCGCg -3'
miRNA:   3'- -GCCGGUa-----CUC-GAGGGGCUCGagCGUG- -5'
29405 3' -60.8 NC_006151.1 + 106880 0.68 0.546629
Target:  5'- uGGCCGUGAcGCUgugcgaccugcgcgaCCCCGcGCU-GCACc -3'
miRNA:   3'- gCCGGUACU-CGA---------------GGGGCuCGAgCGUG- -5'
29405 3' -60.8 NC_006151.1 + 8314 0.68 0.542728
Target:  5'- -cGCCccGAGC-CCCCGGGg-CGCGCg -3'
miRNA:   3'- gcCGGuaCUCGaGGGGCUCgaGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 82148 0.68 0.542728
Target:  5'- gGGCCcgGcGGCUCCagguCCGAGCcgaGCGCc -3'
miRNA:   3'- gCCGGuaC-UCGAGG----GGCUCGag-CGUG- -5'
29405 3' -60.8 NC_006151.1 + 105268 0.68 0.542728
Target:  5'- aGGCCuggGAGgaCUuuGGGCgcgCGCGCg -3'
miRNA:   3'- gCCGGua-CUCgaGGggCUCGa--GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 121051 0.68 0.533018
Target:  5'- uGGCCugcccgcgcGUGGGCUUCaCGuGCUCGCAg -3'
miRNA:   3'- gCCGG---------UACUCGAGGgGCuCGAGCGUg -5'
29405 3' -60.8 NC_006151.1 + 28825 0.68 0.533018
Target:  5'- cCGGCCAau-GCgggCCCCGGGgaCGCGg -3'
miRNA:   3'- -GCCGGUacuCGa--GGGGCUCgaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 122693 0.68 0.53205
Target:  5'- gCGGCCGUGGagcucgcGCUCUUCGGGCggcggcccgaGCACu -3'
miRNA:   3'- -GCCGGUACU-------CGAGGGGCUCGag--------CGUG- -5'
29405 3' -60.8 NC_006151.1 + 89570 0.68 0.523371
Target:  5'- aGGCUgAUGGGCacgCCCaUGGGCUCGCcgGCg -3'
miRNA:   3'- gCCGG-UACUCGa--GGG-GCUCGAGCG--UG- -5'
29405 3' -60.8 NC_006151.1 + 37778 0.68 0.523371
Target:  5'- uGGCCAUGAGC-CgCCGcuacgaUCGCACc -3'
miRNA:   3'- gCCGGUACUCGaGgGGCucg---AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 96782 0.68 0.523371
Target:  5'- gGGagGUGAGCggagagUCCCGAGCcggggCGCGCg -3'
miRNA:   3'- gCCggUACUCGa-----GGGGCUCGa----GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 18674 0.68 0.523371
Target:  5'- cCGGCCGUacGGGUUCCaCGGGCgCGCGg -3'
miRNA:   3'- -GCCGGUA--CUCGAGGgGCUCGaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 97144 0.68 0.523371
Target:  5'- gGGCCAgcgGcAGgUCCaCCGAGC-CGCAg -3'
miRNA:   3'- gCCGGUa--C-UCgAGG-GGCUCGaGCGUg -5'
29405 3' -60.8 NC_006151.1 + 37948 0.68 0.523371
Target:  5'- cCGGCCGcGuGC-CCCgCGAGCUgGCGg -3'
miRNA:   3'- -GCCGGUaCuCGaGGG-GCUCGAgCGUg -5'
29405 3' -60.8 NC_006151.1 + 53412 0.69 0.513792
Target:  5'- aCGGCCGUGAGCaggugcCgCCCGAGCa-GCcCg -3'
miRNA:   3'- -GCCGGUACUCGa-----G-GGGCUCGagCGuG- -5'
29405 3' -60.8 NC_006151.1 + 123373 0.69 0.504285
Target:  5'- cCGGCCGUcacgcgcaAGUUCUUCGAGCUCGUcaACg -3'
miRNA:   3'- -GCCGGUAc-------UCGAGGGGCUCGAGCG--UG- -5'
29405 3' -60.8 NC_006151.1 + 45429 0.69 0.504285
Target:  5'- gGGCCG-GGGgUUCgCGGGCgUCGCACg -3'
miRNA:   3'- gCCGGUaCUCgAGGgGCUCG-AGCGUG- -5'
29405 3' -60.8 NC_006151.1 + 104549 0.69 0.504285
Target:  5'- aGGCC--GAGCUggccgCCCUGGGCgcgcggCGCGCg -3'
miRNA:   3'- gCCGGuaCUCGA-----GGGGCUCGa-----GCGUG- -5'
29405 3' -60.8 NC_006151.1 + 4545 0.69 0.504285
Target:  5'- gCGGCCAUG-GCgUCCCCGAuguGCg-GCAg -3'
miRNA:   3'- -GCCGGUACuCG-AGGGGCU---CGagCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.