Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29405 | 5' | -54.6 | NC_006151.1 | + | 105788 | 0.66 | 0.934016 |
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Target: 5'- -cGCaCGGUGCgCGAGgcGCGGAg-- -3' miRNA: 3'- caUGcGCUACGgGCUCuuCGCCUacu -5' |
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| 29405 | 5' | -54.6 | NC_006151.1 | + | 119836 | 0.66 | 0.934016 |
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Target: 5'- cUGCGCGAcacGgUCGAGcAGGCGGcgGAc -3' miRNA: 3'- cAUGCGCUa--CgGGCUC-UUCGCCuaCU- -5' |
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| 29405 | 5' | -54.6 | NC_006151.1 | + | 104827 | 0.66 | 0.938471 |
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Target: 5'- -cGCGCGAcgGCCuCGccgcggcGGAGGCGGAc-- -3' miRNA: 3'- caUGCGCUa-CGG-GC-------UCUUCGCCUacu -5' |
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| 29405 | 5' | -54.6 | NC_006151.1 | + | 91542 | 0.66 | 0.938954 |
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Target: 5'- cGUGCGCGAggUGCgCGGccAGCGGGg-- -3' miRNA: 3'- -CAUGCGCU--ACGgGCUcuUCGCCUacu -5' |
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| 29405 | 5' | -54.6 | NC_006151.1 | + | 54616 | 0.66 | 0.938954 |
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Target: 5'- gGUGCGcCGGgcgcGCCCcgggGGGAAGCGGcgGc -3' miRNA: 3'- -CAUGC-GCUa---CGGG----CUCUUCGCCuaCu -5' |
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| 29405 | 5' | -54.6 | NC_006151.1 | + | 121449 | 0.66 | 0.938954 |
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Target: 5'- --uCGCuGGUGCCCGcGGAGCuGGggGGc -3' miRNA: 3'- cauGCG-CUACGGGCuCUUCG-CCuaCU- -5' |
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| 29405 | 5' | -54.6 | NC_006151.1 | + | 30736 | 0.66 | 0.938954 |
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Target: 5'- -cACGCGG-GCCCGGagugccgcgggcGggGCGGGg-- -3' miRNA: 3'- caUGCGCUaCGGGCU------------CuuCGCCUacu -5' |
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| 29405 | 5' | -54.6 | NC_006151.1 | + | 22843 | 0.66 | 0.943648 |
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Target: 5'- -aGCGCGcUGCCCaGGAAGCccaGGAg-- -3' miRNA: 3'- caUGCGCuACGGGcUCUUCG---CCUacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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