Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 44026 | 0.73 | 0.595261 |
Target: 5'- --cCGCGGggagccgGCCguCGAGAAGUGGAUGAg -3' miRNA: 3'- cauGCGCUa------CGG--GCUCUUCGCCUACU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 42327 | 0.66 | 0.928832 |
Target: 5'- -cGCGCGAagcUGCgaCGGGAguggAGCGGAgggGAg -3' miRNA: 3'- caUGCGCU---ACGg-GCUCU----UCGCCUa--CU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 42252 | 0.71 | 0.728909 |
Target: 5'- --uCGCGGccCCCGGGGAGCGGggGGu -3' miRNA: 3'- cauGCGCUacGGGCUCUUCGCCuaCU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 38305 | 0.68 | 0.855949 |
Target: 5'- --cCGCGcgGCCCGGGcccGCGGAg-- -3' miRNA: 3'- cauGCGCuaCGGGCUCuu-CGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 38115 | 0.66 | 0.923403 |
Target: 5'- -gACGCGAUcCCCGGGGccggcccggccgAGCGGcgGc -3' miRNA: 3'- caUGCGCUAcGGGCUCU------------UCGCCuaCu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 34610 | 0.7 | 0.748692 |
Target: 5'- -cGCGCGccgaGCgCGAGgcGCGGGUGGg -3' miRNA: 3'- caUGCGCua--CGgGCUCuuCGCCUACU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 31951 | 0.67 | 0.917727 |
Target: 5'- -cGCGUGAUGaCgCCGGGGAcGCGGGa-- -3' miRNA: 3'- caUGCGCUAC-G-GGCUCUU-CGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 30950 | 0.74 | 0.554242 |
Target: 5'- gGUAuCGCGGcgGCCCGGGAgagcgGGCGGggGAc -3' miRNA: 3'- -CAU-GCGCUa-CGGGCUCU-----UCGCCuaCU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 30736 | 0.66 | 0.938954 |
Target: 5'- -cACGCGG-GCCCGGagugccgcgggcGggGCGGGg-- -3' miRNA: 3'- caUGCGCUaCGGGCU------------CuuCGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 30625 | 0.68 | 0.871274 |
Target: 5'- cGUGCGCGcUGUgCGGGuGGGUGGggGAg -3' miRNA: 3'- -CAUGCGCuACGgGCUC-UUCGCCuaCU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 29412 | 0.68 | 0.848777 |
Target: 5'- -cGCGCGGagaaggcucggugugGCCgCGGGggGCGGcgGGg -3' miRNA: 3'- caUGCGCUa--------------CGG-GCUCuuCGCCuaCU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 28943 | 0.68 | 0.855949 |
Target: 5'- -cACGUGG-GCCCGAGGGcCGGAucUGAu -3' miRNA: 3'- caUGCGCUaCGGGCUCUUcGCCU--ACU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 28873 | 0.7 | 0.758431 |
Target: 5'- -gGCGCGuc-CCCG-GAGGCGGGUGc -3' miRNA: 3'- caUGCGCuacGGGCuCUUCGCCUACu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 28592 | 0.7 | 0.758431 |
Target: 5'- -gGCGCGuc-CCCG-GAGGCGGGUGc -3' miRNA: 3'- caUGCGCuacGGGCuCUUCGCCUACu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 27132 | 0.66 | 0.928832 |
Target: 5'- -gACgGCGAUGCCgCGAaaGAGGCGGu--- -3' miRNA: 3'- caUG-CGCUACGG-GCU--CUUCGCCuacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 24307 | 0.71 | 0.738849 |
Target: 5'- --uCGgGGUGCaccCCGAGGGcGCGGAUGAg -3' miRNA: 3'- cauGCgCUACG---GGCUCUU-CGCCUACU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 23783 | 0.68 | 0.878608 |
Target: 5'- -cACGUugacGggGUCCGAGGAGCGGGa-- -3' miRNA: 3'- caUGCG----CuaCGGGCUCUUCGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 22843 | 0.66 | 0.943648 |
Target: 5'- -aGCGCGcUGCCCaGGAAGCccaGGAg-- -3' miRNA: 3'- caUGCGCuACGGGcUCUUCG---CCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 22656 | 0.67 | 0.899238 |
Target: 5'- -gACGCaGAUGUagaUCGAGguGCGGAUGu -3' miRNA: 3'- caUGCG-CUACG---GGCUCuuCGCCUACu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 21319 | 0.68 | 0.878608 |
Target: 5'- -gGCGCGAgacGCCCGGcGcGGCGGGg-- -3' miRNA: 3'- caUGCGCUa--CGGGCU-CuUCGCCUacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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