miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 5' -54.6 NC_006151.1 + 89115 0.68 0.863718
Target:  5'- cUGCGCGAga-CCGAG-GGCGGcgGGa -3'
miRNA:   3'- cAUGCGCUacgGGCUCuUCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 89830 0.66 0.923403
Target:  5'- -aGCGCGAUGCugCCGgcguAGgcGUGGGUGu -3'
miRNA:   3'- caUGCGCUACG--GGC----UCuuCGCCUACu -5'
29405 5' -54.6 NC_006151.1 + 91542 0.66 0.938954
Target:  5'- cGUGCGCGAggUGCgCGGccAGCGGGg-- -3'
miRNA:   3'- -CAUGCGCU--ACGgGCUcuUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 95918 0.68 0.855949
Target:  5'- -cGCGCGugcagucGCCCGAGGGcguGCGGuUGAa -3'
miRNA:   3'- caUGCGCua-----CGGGCUCUU---CGCCuACU- -5'
29405 5' -54.6 NC_006151.1 + 104827 0.66 0.938471
Target:  5'- -cGCGCGAcgGCCuCGccgcggcGGAGGCGGAc-- -3'
miRNA:   3'- caUGCGCUa-CGG-GC-------UCUUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 105788 0.66 0.934016
Target:  5'- -cGCaCGGUGCgCGAGgcGCGGAg-- -3'
miRNA:   3'- caUGcGCUACGgGCUCuuCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 111310 0.72 0.667801
Target:  5'- -aACGCGGcggccgcgUGCCCGGGcacGGGCGaGAUGAc -3'
miRNA:   3'- caUGCGCU--------ACGGGCUC---UUCGC-CUACU- -5'
29405 5' -54.6 NC_006151.1 + 113600 0.68 0.878608
Target:  5'- uGUGCGCcGUGgCCGAGcgccAGGCGGAc-- -3'
miRNA:   3'- -CAUGCGcUACgGGCUC----UUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 114392 0.72 0.657458
Target:  5'- uGUACGUGGUGuucCCCGAGAAGUcGGUGc -3'
miRNA:   3'- -CAUGCGCUAC---GGGCUCUUCGcCUACu -5'
29405 5' -54.6 NC_006151.1 + 115056 0.72 0.678114
Target:  5'- uGUACGC---GUCCGGGggGCGGcUGAg -3'
miRNA:   3'- -CAUGCGcuaCGGGCUCuuCGCCuACU- -5'
29405 5' -54.6 NC_006151.1 + 115494 1.09 0.003384
Target:  5'- cGUACGCGAUGCCCGAGAAGCGGAUGAa -3'
miRNA:   3'- -CAUGCGCUACGGGCUCUUCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 117145 0.7 0.762294
Target:  5'- gGUGCGCGAccaggcgcccgcuguUGCUCGAGAcGCGGuaGAa -3'
miRNA:   3'- -CAUGCGCU---------------ACGGGCUCUuCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 117237 0.68 0.866767
Target:  5'- -cGCGCGuccacgucggcggGCCCGAGgcGCGGGc-- -3'
miRNA:   3'- caUGCGCua-----------CGGGCUCuuCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 119836 0.66 0.934016
Target:  5'- cUGCGCGAcacGgUCGAGcAGGCGGcgGAc -3'
miRNA:   3'- cAUGCGCUa--CgGGCUC-UUCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 121449 0.66 0.938954
Target:  5'- --uCGCuGGUGCCCGcGGAGCuGGggGGc -3'
miRNA:   3'- cauGCG-CUACGGGCuCUUCG-CCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 121512 0.78 0.360303
Target:  5'- -gGCGCcccGCCCGAGAAGCGGcUGAc -3'
miRNA:   3'- caUGCGcuaCGGGCUCUUCGCCuACU- -5'
29405 5' -54.6 NC_006151.1 + 122220 0.7 0.777553
Target:  5'- cGUGCGCGGUGUgcuUCGAGGAGCuGugcGUGAc -3'
miRNA:   3'- -CAUGCGCUACG---GGCUCUUCGcC---UACU- -5'
29405 5' -54.6 NC_006151.1 + 122426 0.74 0.564431
Target:  5'- -gACGCcgccGAgGCCCGGGAGGCGGAg-- -3'
miRNA:   3'- caUGCG----CUaCGGGCUCUUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 124078 0.69 0.796141
Target:  5'- cGUGCGCGcgGCCgCGAccGAGCGGGa-- -3'
miRNA:   3'- -CAUGCGCuaCGG-GCUc-UUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 125578 0.66 0.928832
Target:  5'- aUGCGCG-UGCCCGGcGAGcGCGGcacGUGc -3'
miRNA:   3'- cAUGCGCuACGGGCU-CUU-CGCC---UACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.