miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 5' -54.6 NC_006151.1 + 30950 0.74 0.554242
Target:  5'- gGUAuCGCGGcgGCCCGGGAgagcgGGCGGggGAc -3'
miRNA:   3'- -CAU-GCGCUa-CGGGCUCU-----UCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 31951 0.67 0.917727
Target:  5'- -cGCGUGAUGaCgCCGGGGAcGCGGGa-- -3'
miRNA:   3'- caUGCGCUAC-G-GGCUCUU-CGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 34610 0.7 0.748692
Target:  5'- -cGCGCGccgaGCgCGAGgcGCGGGUGGg -3'
miRNA:   3'- caUGCGCua--CGgGCUCuuCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 38115 0.66 0.923403
Target:  5'- -gACGCGAUcCCCGGGGccggcccggccgAGCGGcgGc -3'
miRNA:   3'- caUGCGCUAcGGGCUCU------------UCGCCuaCu -5'
29405 5' -54.6 NC_006151.1 + 38305 0.68 0.855949
Target:  5'- --cCGCGcgGCCCGGGcccGCGGAg-- -3'
miRNA:   3'- cauGCGCuaCGGGCUCuu-CGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 42252 0.71 0.728909
Target:  5'- --uCGCGGccCCCGGGGAGCGGggGGu -3'
miRNA:   3'- cauGCGCUacGGGCUCUUCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 42327 0.66 0.928832
Target:  5'- -cGCGCGAagcUGCgaCGGGAguggAGCGGAgggGAg -3'
miRNA:   3'- caUGCGCU---ACGg-GCUCU----UCGCCUa--CU- -5'
29405 5' -54.6 NC_006151.1 + 44026 0.73 0.595261
Target:  5'- --cCGCGGggagccgGCCguCGAGAAGUGGAUGAg -3'
miRNA:   3'- cauGCGCUa------CGG--GCUCUUCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 45582 0.68 0.871274
Target:  5'- --cCGgGAcgGCCCGAGggGgCGGggGGa -3'
miRNA:   3'- cauGCgCUa-CGGGCUCuuC-GCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 50152 0.71 0.688388
Target:  5'- -cGCGCGc-GCCCGAcGAGCGGAcGAg -3'
miRNA:   3'- caUGCGCuaCGGGCUcUUCGCCUaCU- -5'
29405 5' -54.6 NC_006151.1 + 52372 0.7 0.786919
Target:  5'- -gGCGCGcccccgggGCCCGcGGggGCGGcgGGc -3'
miRNA:   3'- caUGCGCua------CGGGC-UCuuCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 54616 0.66 0.938954
Target:  5'- gGUGCGcCGGgcgcGCCCcgggGGGAAGCGGcgGc -3'
miRNA:   3'- -CAUGC-GCUa---CGGG----CUCUUCGCCuaCu -5'
29405 5' -54.6 NC_006151.1 + 56313 0.74 0.544109
Target:  5'- -cGCGCGGUGCCUGAGccuGGGCcGGUGGc -3'
miRNA:   3'- caUGCGCUACGGGCUC---UUCGcCUACU- -5'
29405 5' -54.6 NC_006151.1 + 65732 0.68 0.863718
Target:  5'- cUGCGCGcgGCCC-AGGAGcCGGGa-- -3'
miRNA:   3'- cAUGCGCuaCGGGcUCUUC-GCCUacu -5'
29405 5' -54.6 NC_006151.1 + 72554 0.74 0.544109
Target:  5'- -cACGCGcgGCCgCGcgggaggguGGggGCGGGUGAc -3'
miRNA:   3'- caUGCGCuaCGG-GC---------UCuuCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 75408 0.72 0.636719
Target:  5'- cGUGCGCGG-GUCCGGGAGGCccGGcGUGGg -3'
miRNA:   3'- -CAUGCGCUaCGGGCUCUUCG--CC-UACU- -5'
29405 5' -54.6 NC_006151.1 + 76671 0.66 0.928832
Target:  5'- uGUGCGCGGU-CgCUGGGGAGCaGGggGGa -3'
miRNA:   3'- -CAUGCGCUAcG-GGCUCUUCG-CCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 83579 0.67 0.885717
Target:  5'- --cCGCGG-GCCCGAaGAGCGGGa-- -3'
miRNA:   3'- cauGCGCUaCGGGCUcUUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 84387 0.71 0.728909
Target:  5'- -cGCGCGggGacgggCGGGGAGCGGGUGGg -3'
miRNA:   3'- caUGCGCuaCgg---GCUCUUCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 84738 0.67 0.917727
Target:  5'- --uCGUGGUGCUCGAGGAGaCGGc--- -3'
miRNA:   3'- cauGCGCUACGGGCUCUUC-GCCuacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.