miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 5' -54.6 NC_006151.1 + 2485 0.74 0.524031
Target:  5'- -cGCGCGGUGCCCGA-AGGCGGc--- -3'
miRNA:   3'- caUGCGCUACGGGCUcUUCGCCuacu -5'
29405 5' -54.6 NC_006151.1 + 5251 0.75 0.475191
Target:  5'- -gGCgGCGGggGCCCGGGggGCGGAg-- -3'
miRNA:   3'- caUG-CGCUa-CGGGCUCuuCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 8126 0.71 0.688388
Target:  5'- -aGCGCGGaccccGCCCGguggGGggGCGGGUGc -3'
miRNA:   3'- caUGCGCUa----CGGGC----UCuuCGCCUACu -5'
29405 5' -54.6 NC_006151.1 + 8366 0.67 0.899238
Target:  5'- -gGCGCGAgGCCCccgcccccgGGGggGUccgGGAUGGg -3'
miRNA:   3'- caUGCGCUaCGGG---------CUCuuCG---CCUACU- -5'
29405 5' -54.6 NC_006151.1 + 9700 0.67 0.917727
Target:  5'- -cGCG-GGUGCCCGGGAGaCGGGa-- -3'
miRNA:   3'- caUGCgCUACGGGCUCUUcGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 11791 0.68 0.863718
Target:  5'- -gGCGCGuggGCgaGAGggGCgGGGUGGg -3'
miRNA:   3'- caUGCGCua-CGggCUCuuCG-CCUACU- -5'
29405 5' -54.6 NC_006151.1 + 17125 0.69 0.80521
Target:  5'- -gGCgGCGGUGCUgCGGGAGGCGGccagGAg -3'
miRNA:   3'- caUG-CGCUACGG-GCUCUUCGCCua--CU- -5'
29405 5' -54.6 NC_006151.1 + 18762 0.67 0.917727
Target:  5'- -cACGgGGUGCCCGGGGcccgGGcCGGGg-- -3'
miRNA:   3'- caUGCgCUACGGGCUCU----UC-GCCUacu -5'
29405 5' -54.6 NC_006151.1 + 21319 0.68 0.878608
Target:  5'- -gGCGCGAgacGCCCGGcGcGGCGGGg-- -3'
miRNA:   3'- caUGCGCUa--CGGGCU-CuUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 22656 0.67 0.899238
Target:  5'- -gACGCaGAUGUagaUCGAGguGCGGAUGu -3'
miRNA:   3'- caUGCG-CUACG---GGCUCuuCGCCUACu -5'
29405 5' -54.6 NC_006151.1 + 22843 0.66 0.943648
Target:  5'- -aGCGCGcUGCCCaGGAAGCccaGGAg-- -3'
miRNA:   3'- caUGCGCuACGGGcUCUUCG---CCUacu -5'
29405 5' -54.6 NC_006151.1 + 23783 0.68 0.878608
Target:  5'- -cACGUugacGggGUCCGAGGAGCGGGa-- -3'
miRNA:   3'- caUGCG----CuaCGGGCUCUUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 24307 0.71 0.738849
Target:  5'- --uCGgGGUGCaccCCGAGGGcGCGGAUGAg -3'
miRNA:   3'- cauGCgCUACG---GGCUCUU-CGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 27132 0.66 0.928832
Target:  5'- -gACgGCGAUGCCgCGAaaGAGGCGGu--- -3'
miRNA:   3'- caUG-CGCUACGG-GCU--CUUCGCCuacu -5'
29405 5' -54.6 NC_006151.1 + 28592 0.7 0.758431
Target:  5'- -gGCGCGuc-CCCG-GAGGCGGGUGc -3'
miRNA:   3'- caUGCGCuacGGGCuCUUCGCCUACu -5'
29405 5' -54.6 NC_006151.1 + 28873 0.7 0.758431
Target:  5'- -gGCGCGuc-CCCG-GAGGCGGGUGc -3'
miRNA:   3'- caUGCGCuacGGGCuCUUCGCCUACu -5'
29405 5' -54.6 NC_006151.1 + 28943 0.68 0.855949
Target:  5'- -cACGUGG-GCCCGAGGGcCGGAucUGAu -3'
miRNA:   3'- caUGCGCUaCGGGCUCUUcGCCU--ACU- -5'
29405 5' -54.6 NC_006151.1 + 29412 0.68 0.848777
Target:  5'- -cGCGCGGagaaggcucggugugGCCgCGGGggGCGGcgGGg -3'
miRNA:   3'- caUGCGCUa--------------CGG-GCUCuuCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 30625 0.68 0.871274
Target:  5'- cGUGCGCGcUGUgCGGGuGGGUGGggGAg -3'
miRNA:   3'- -CAUGCGCuACGgGCUC-UUCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 30736 0.66 0.938954
Target:  5'- -cACGCGG-GCCCGGagugccgcgggcGggGCGGGg-- -3'
miRNA:   3'- caUGCGCUaCGGGCU------------CuuCGCCUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.