Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 2485 | 0.74 | 0.524031 |
Target: 5'- -cGCGCGGUGCCCGA-AGGCGGc--- -3' miRNA: 3'- caUGCGCUACGGGCUcUUCGCCuacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 5251 | 0.75 | 0.475191 |
Target: 5'- -gGCgGCGGggGCCCGGGggGCGGAg-- -3' miRNA: 3'- caUG-CGCUa-CGGGCUCuuCGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 8126 | 0.71 | 0.688388 |
Target: 5'- -aGCGCGGaccccGCCCGguggGGggGCGGGUGc -3' miRNA: 3'- caUGCGCUa----CGGGC----UCuuCGCCUACu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 8366 | 0.67 | 0.899238 |
Target: 5'- -gGCGCGAgGCCCccgcccccgGGGggGUccgGGAUGGg -3' miRNA: 3'- caUGCGCUaCGGG---------CUCuuCG---CCUACU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 9700 | 0.67 | 0.917727 |
Target: 5'- -cGCG-GGUGCCCGGGAGaCGGGa-- -3' miRNA: 3'- caUGCgCUACGGGCUCUUcGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 11791 | 0.68 | 0.863718 |
Target: 5'- -gGCGCGuggGCgaGAGggGCgGGGUGGg -3' miRNA: 3'- caUGCGCua-CGggCUCuuCG-CCUACU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 17125 | 0.69 | 0.80521 |
Target: 5'- -gGCgGCGGUGCUgCGGGAGGCGGccagGAg -3' miRNA: 3'- caUG-CGCUACGG-GCUCUUCGCCua--CU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 18762 | 0.67 | 0.917727 |
Target: 5'- -cACGgGGUGCCCGGGGcccgGGcCGGGg-- -3' miRNA: 3'- caUGCgCUACGGGCUCU----UC-GCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 21319 | 0.68 | 0.878608 |
Target: 5'- -gGCGCGAgacGCCCGGcGcGGCGGGg-- -3' miRNA: 3'- caUGCGCUa--CGGGCU-CuUCGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 22656 | 0.67 | 0.899238 |
Target: 5'- -gACGCaGAUGUagaUCGAGguGCGGAUGu -3' miRNA: 3'- caUGCG-CUACG---GGCUCuuCGCCUACu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 22843 | 0.66 | 0.943648 |
Target: 5'- -aGCGCGcUGCCCaGGAAGCccaGGAg-- -3' miRNA: 3'- caUGCGCuACGGGcUCUUCG---CCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 23783 | 0.68 | 0.878608 |
Target: 5'- -cACGUugacGggGUCCGAGGAGCGGGa-- -3' miRNA: 3'- caUGCG----CuaCGGGCUCUUCGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 24307 | 0.71 | 0.738849 |
Target: 5'- --uCGgGGUGCaccCCGAGGGcGCGGAUGAg -3' miRNA: 3'- cauGCgCUACG---GGCUCUU-CGCCUACU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 27132 | 0.66 | 0.928832 |
Target: 5'- -gACgGCGAUGCCgCGAaaGAGGCGGu--- -3' miRNA: 3'- caUG-CGCUACGG-GCU--CUUCGCCuacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 28592 | 0.7 | 0.758431 |
Target: 5'- -gGCGCGuc-CCCG-GAGGCGGGUGc -3' miRNA: 3'- caUGCGCuacGGGCuCUUCGCCUACu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 28873 | 0.7 | 0.758431 |
Target: 5'- -gGCGCGuc-CCCG-GAGGCGGGUGc -3' miRNA: 3'- caUGCGCuacGGGCuCUUCGCCUACu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 28943 | 0.68 | 0.855949 |
Target: 5'- -cACGUGG-GCCCGAGGGcCGGAucUGAu -3' miRNA: 3'- caUGCGCUaCGGGCUCUUcGCCU--ACU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 29412 | 0.68 | 0.848777 |
Target: 5'- -cGCGCGGagaaggcucggugugGCCgCGGGggGCGGcgGGg -3' miRNA: 3'- caUGCGCUa--------------CGG-GCUCuuCGCCuaCU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 30625 | 0.68 | 0.871274 |
Target: 5'- cGUGCGCGcUGUgCGGGuGGGUGGggGAg -3' miRNA: 3'- -CAUGCGCuACGgGCUC-UUCGCCuaCU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 30736 | 0.66 | 0.938954 |
Target: 5'- -cACGCGG-GCCCGGagugccgcgggcGggGCGGGg-- -3' miRNA: 3'- caUGCGCUaCGGGCU------------CuuCGCCUacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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