miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 5' -54.6 NC_006151.1 + 141713 0.79 0.292201
Target:  5'- -gACGCGGUGCCCGGGGcguuaauacccagGGCGGAgGGg -3'
miRNA:   3'- caUGCGCUACGGGCUCU-------------UCGCCUaCU- -5'
29405 5' -54.6 NC_006151.1 + 141310 0.66 0.925604
Target:  5'- cGUACGCGGgcggGUCCGGGAuggucaccgcguacGCGGgcGGg -3'
miRNA:   3'- -CAUGCGCUa---CGGGCUCUu-------------CGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 140391 0.67 0.899238
Target:  5'- cUGCGUGcUGCCCGAGGaccuGGgGGAc-- -3'
miRNA:   3'- cAUGCGCuACGGGCUCU----UCgCCUacu -5'
29405 5' -54.6 NC_006151.1 + 138244 0.67 0.885717
Target:  5'- aGUACGCGG-GCgCGAccgcGcAGCGGGUGGu -3'
miRNA:   3'- -CAUGCGCUaCGgGCU----CuUCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 134192 0.71 0.728909
Target:  5'- aUACGCGAUGCUCGucgcgcagcgcGGggGCGGu--- -3'
miRNA:   3'- cAUGCGCUACGGGC-----------UCuuCGCCuacu -5'
29405 5' -54.6 NC_006151.1 + 130270 0.67 0.911807
Target:  5'- -gGCGCGcgGcCCCGAGGccGCGGGc-- -3'
miRNA:   3'- caUGCGCuaC-GGGCUCUu-CGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 127264 0.71 0.728909
Target:  5'- -cGCGCGGUGgCCGGuGAGGUcGAUGAc -3'
miRNA:   3'- caUGCGCUACgGGCU-CUUCGcCUACU- -5'
29405 5' -54.6 NC_006151.1 + 125780 0.77 0.385056
Target:  5'- cGUGCGCaugguggaGGUGCCCGAGAcgaucagcacGCGGGUGAc -3'
miRNA:   3'- -CAUGCG--------CUACGGGCUCUu---------CGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 125578 0.66 0.928832
Target:  5'- aUGCGCG-UGCCCGGcGAGcGCGGcacGUGc -3'
miRNA:   3'- cAUGCGCuACGGGCU-CUU-CGCC---UACu -5'
29405 5' -54.6 NC_006151.1 + 124078 0.69 0.796141
Target:  5'- cGUGCGCGcgGCCgCGAccGAGCGGGa-- -3'
miRNA:   3'- -CAUGCGCuaCGG-GCUc-UUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 122426 0.74 0.564431
Target:  5'- -gACGCcgccGAgGCCCGGGAGGCGGAg-- -3'
miRNA:   3'- caUGCG----CUaCGGGCUCUUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 122220 0.7 0.777553
Target:  5'- cGUGCGCGGUGUgcuUCGAGGAGCuGugcGUGAc -3'
miRNA:   3'- -CAUGCGCUACG---GGCUCUUCGcC---UACU- -5'
29405 5' -54.6 NC_006151.1 + 121512 0.78 0.360303
Target:  5'- -gGCGCcccGCCCGAGAAGCGGcUGAc -3'
miRNA:   3'- caUGCGcuaCGGGCUCUUCGCCuACU- -5'
29405 5' -54.6 NC_006151.1 + 121449 0.66 0.938954
Target:  5'- --uCGCuGGUGCCCGcGGAGCuGGggGGc -3'
miRNA:   3'- cauGCG-CUACGGGCuCUUCG-CCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 119836 0.66 0.934016
Target:  5'- cUGCGCGAcacGgUCGAGcAGGCGGcgGAc -3'
miRNA:   3'- cAUGCGCUa--CgGGCUC-UUCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 117237 0.68 0.866767
Target:  5'- -cGCGCGuccacgucggcggGCCCGAGgcGCGGGc-- -3'
miRNA:   3'- caUGCGCua-----------CGGGCUCuuCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 117145 0.7 0.762294
Target:  5'- gGUGCGCGAccaggcgcccgcuguUGCUCGAGAcGCGGuaGAa -3'
miRNA:   3'- -CAUGCGCU---------------ACGGGCUCUuCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 115494 1.09 0.003384
Target:  5'- cGUACGCGAUGCCCGAGAAGCGGAUGAa -3'
miRNA:   3'- -CAUGCGCUACGGGCUCUUCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 115056 0.72 0.678114
Target:  5'- uGUACGC---GUCCGGGggGCGGcUGAg -3'
miRNA:   3'- -CAUGCGcuaCGGGCUCuuCGCCuACU- -5'
29405 5' -54.6 NC_006151.1 + 114392 0.72 0.657458
Target:  5'- uGUACGUGGUGuucCCCGAGAAGUcGGUGc -3'
miRNA:   3'- -CAUGCGCUAC---GGGCUCUUCGcCUACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.