Results 1 - 20 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 115494 | 1.09 | 0.003384 |
Target: 5'- cGUACGCGAUGCCCGAGAAGCGGAUGAa -3' miRNA: 3'- -CAUGCGCUACGGGCUCUUCGCCUACU- -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 141713 | 0.79 | 0.292201 |
Target: 5'- -gACGCGGUGCCCGGGGcguuaauacccagGGCGGAgGGg -3' miRNA: 3'- caUGCGCUACGGGCUCU-------------UCGCCUaCU- -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 121512 | 0.78 | 0.360303 |
Target: 5'- -gGCGCcccGCCCGAGAAGCGGcUGAc -3' miRNA: 3'- caUGCGcuaCGGGCUCUUCGCCuACU- -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 125780 | 0.77 | 0.385056 |
Target: 5'- cGUGCGCaugguggaGGUGCCCGAGAcgaucagcacGCGGGUGAc -3' miRNA: 3'- -CAUGCG--------CUACGGGCUCUu---------CGCCUACU- -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 5251 | 0.75 | 0.475191 |
Target: 5'- -gGCgGCGGggGCCCGGGggGCGGAg-- -3' miRNA: 3'- caUG-CGCUa-CGGGCUCuuCGCCUacu -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 2485 | 0.74 | 0.524031 |
Target: 5'- -cGCGCGGUGCCCGA-AGGCGGc--- -3' miRNA: 3'- caUGCGCUACGGGCUcUUCGCCuacu -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 56313 | 0.74 | 0.544109 |
Target: 5'- -cGCGCGGUGCCUGAGccuGGGCcGGUGGc -3' miRNA: 3'- caUGCGCUACGGGCUC---UUCGcCUACU- -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 72554 | 0.74 | 0.544109 |
Target: 5'- -cACGCGcgGCCgCGcgggaggguGGggGCGGGUGAc -3' miRNA: 3'- caUGCGCuaCGG-GC---------UCuuCGCCUACU- -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 30950 | 0.74 | 0.554242 |
Target: 5'- gGUAuCGCGGcgGCCCGGGAgagcgGGCGGggGAc -3' miRNA: 3'- -CAU-GCGCUa-CGGGCUCU-----UCGCCuaCU- -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 122426 | 0.74 | 0.564431 |
Target: 5'- -gACGCcgccGAgGCCCGGGAGGCGGAg-- -3' miRNA: 3'- caUGCG----CUaCGGGCUCUUCGCCUacu -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 44026 | 0.73 | 0.595261 |
Target: 5'- --cCGCGGggagccgGCCguCGAGAAGUGGAUGAg -3' miRNA: 3'- cauGCGCUa------CGG--GCUCUUCGCCUACU- -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 75408 | 0.72 | 0.636719 |
Target: 5'- cGUGCGCGG-GUCCGGGAGGCccGGcGUGGg -3' miRNA: 3'- -CAUGCGCUaCGGGCUCUUCG--CC-UACU- -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 114392 | 0.72 | 0.657458 |
Target: 5'- uGUACGUGGUGuucCCCGAGAAGUcGGUGc -3' miRNA: 3'- -CAUGCGCUAC---GGGCUCUUCGcCUACu -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 111310 | 0.72 | 0.667801 |
Target: 5'- -aACGCGGcggccgcgUGCCCGGGcacGGGCGaGAUGAc -3' miRNA: 3'- caUGCGCU--------ACGGGCUC---UUCGC-CUACU- -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 115056 | 0.72 | 0.678114 |
Target: 5'- uGUACGC---GUCCGGGggGCGGcUGAg -3' miRNA: 3'- -CAUGCGcuaCGGGCUCuuCGCCuACU- -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 8126 | 0.71 | 0.688388 |
Target: 5'- -aGCGCGGaccccGCCCGguggGGggGCGGGUGc -3' miRNA: 3'- caUGCGCUa----CGGGC----UCuuCGCCUACu -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 50152 | 0.71 | 0.688388 |
Target: 5'- -cGCGCGc-GCCCGAcGAGCGGAcGAg -3' miRNA: 3'- caUGCGCuaCGGGCUcUUCGCCUaCU- -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 42252 | 0.71 | 0.728909 |
Target: 5'- --uCGCGGccCCCGGGGAGCGGggGGu -3' miRNA: 3'- cauGCGCUacGGGCUCUUCGCCuaCU- -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 134192 | 0.71 | 0.728909 |
Target: 5'- aUACGCGAUGCUCGucgcgcagcgcGGggGCGGu--- -3' miRNA: 3'- cAUGCGCUACGGGC-----------UCuuCGCCuacu -5' |
|||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 84387 | 0.71 | 0.728909 |
Target: 5'- -cGCGCGggGacgggCGGGGAGCGGGUGGg -3' miRNA: 3'- caUGCGCuaCgg---GCUCUUCGCCUACU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home