miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 5' -54.6 NC_006151.1 + 115494 1.09 0.003384
Target:  5'- cGUACGCGAUGCCCGAGAAGCGGAUGAa -3'
miRNA:   3'- -CAUGCGCUACGGGCUCUUCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 141713 0.79 0.292201
Target:  5'- -gACGCGGUGCCCGGGGcguuaauacccagGGCGGAgGGg -3'
miRNA:   3'- caUGCGCUACGGGCUCU-------------UCGCCUaCU- -5'
29405 5' -54.6 NC_006151.1 + 121512 0.78 0.360303
Target:  5'- -gGCGCcccGCCCGAGAAGCGGcUGAc -3'
miRNA:   3'- caUGCGcuaCGGGCUCUUCGCCuACU- -5'
29405 5' -54.6 NC_006151.1 + 125780 0.77 0.385056
Target:  5'- cGUGCGCaugguggaGGUGCCCGAGAcgaucagcacGCGGGUGAc -3'
miRNA:   3'- -CAUGCG--------CUACGGGCUCUu---------CGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 5251 0.75 0.475191
Target:  5'- -gGCgGCGGggGCCCGGGggGCGGAg-- -3'
miRNA:   3'- caUG-CGCUa-CGGGCUCuuCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 2485 0.74 0.524031
Target:  5'- -cGCGCGGUGCCCGA-AGGCGGc--- -3'
miRNA:   3'- caUGCGCUACGGGCUcUUCGCCuacu -5'
29405 5' -54.6 NC_006151.1 + 56313 0.74 0.544109
Target:  5'- -cGCGCGGUGCCUGAGccuGGGCcGGUGGc -3'
miRNA:   3'- caUGCGCUACGGGCUC---UUCGcCUACU- -5'
29405 5' -54.6 NC_006151.1 + 72554 0.74 0.544109
Target:  5'- -cACGCGcgGCCgCGcgggaggguGGggGCGGGUGAc -3'
miRNA:   3'- caUGCGCuaCGG-GC---------UCuuCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 30950 0.74 0.554242
Target:  5'- gGUAuCGCGGcgGCCCGGGAgagcgGGCGGggGAc -3'
miRNA:   3'- -CAU-GCGCUa-CGGGCUCU-----UCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 122426 0.74 0.564431
Target:  5'- -gACGCcgccGAgGCCCGGGAGGCGGAg-- -3'
miRNA:   3'- caUGCG----CUaCGGGCUCUUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 44026 0.73 0.595261
Target:  5'- --cCGCGGggagccgGCCguCGAGAAGUGGAUGAg -3'
miRNA:   3'- cauGCGCUa------CGG--GCUCUUCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 75408 0.72 0.636719
Target:  5'- cGUGCGCGG-GUCCGGGAGGCccGGcGUGGg -3'
miRNA:   3'- -CAUGCGCUaCGGGCUCUUCG--CC-UACU- -5'
29405 5' -54.6 NC_006151.1 + 114392 0.72 0.657458
Target:  5'- uGUACGUGGUGuucCCCGAGAAGUcGGUGc -3'
miRNA:   3'- -CAUGCGCUAC---GGGCUCUUCGcCUACu -5'
29405 5' -54.6 NC_006151.1 + 111310 0.72 0.667801
Target:  5'- -aACGCGGcggccgcgUGCCCGGGcacGGGCGaGAUGAc -3'
miRNA:   3'- caUGCGCU--------ACGGGCUC---UUCGC-CUACU- -5'
29405 5' -54.6 NC_006151.1 + 115056 0.72 0.678114
Target:  5'- uGUACGC---GUCCGGGggGCGGcUGAg -3'
miRNA:   3'- -CAUGCGcuaCGGGCUCuuCGCCuACU- -5'
29405 5' -54.6 NC_006151.1 + 8126 0.71 0.688388
Target:  5'- -aGCGCGGaccccGCCCGguggGGggGCGGGUGc -3'
miRNA:   3'- caUGCGCUa----CGGGC----UCuuCGCCUACu -5'
29405 5' -54.6 NC_006151.1 + 50152 0.71 0.688388
Target:  5'- -cGCGCGc-GCCCGAcGAGCGGAcGAg -3'
miRNA:   3'- caUGCGCuaCGGGCUcUUCGCCUaCU- -5'
29405 5' -54.6 NC_006151.1 + 127264 0.71 0.728909
Target:  5'- -cGCGCGGUGgCCGGuGAGGUcGAUGAc -3'
miRNA:   3'- caUGCGCUACgGGCU-CUUCGcCUACU- -5'
29405 5' -54.6 NC_006151.1 + 42252 0.71 0.728909
Target:  5'- --uCGCGGccCCCGGGGAGCGGggGGu -3'
miRNA:   3'- cauGCGCUacGGGCUCUUCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 134192 0.71 0.728909
Target:  5'- aUACGCGAUGCUCGucgcgcagcgcGGggGCGGu--- -3'
miRNA:   3'- cAUGCGCUACGGGC-----------UCuuCGCCuacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.