miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 5' -54.6 NC_006151.1 + 22843 0.66 0.943648
Target:  5'- -aGCGCGcUGCCCaGGAAGCccaGGAg-- -3'
miRNA:   3'- caUGCGCuACGGGcUCUUCG---CCUacu -5'
29405 5' -54.6 NC_006151.1 + 91542 0.66 0.938954
Target:  5'- cGUGCGCGAggUGCgCGGccAGCGGGg-- -3'
miRNA:   3'- -CAUGCGCU--ACGgGCUcuUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 54616 0.66 0.938954
Target:  5'- gGUGCGcCGGgcgcGCCCcgggGGGAAGCGGcgGc -3'
miRNA:   3'- -CAUGC-GCUa---CGGG----CUCUUCGCCuaCu -5'
29405 5' -54.6 NC_006151.1 + 121449 0.66 0.938954
Target:  5'- --uCGCuGGUGCCCGcGGAGCuGGggGGc -3'
miRNA:   3'- cauGCG-CUACGGGCuCUUCG-CCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 30736 0.66 0.938954
Target:  5'- -cACGCGG-GCCCGGagugccgcgggcGggGCGGGg-- -3'
miRNA:   3'- caUGCGCUaCGGGCU------------CuuCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 104827 0.66 0.938471
Target:  5'- -cGCGCGAcgGCCuCGccgcggcGGAGGCGGAc-- -3'
miRNA:   3'- caUGCGCUa-CGG-GC-------UCUUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 119836 0.66 0.934016
Target:  5'- cUGCGCGAcacGgUCGAGcAGGCGGcgGAc -3'
miRNA:   3'- cAUGCGCUa--CgGGCUC-UUCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 105788 0.66 0.934016
Target:  5'- -cGCaCGGUGCgCGAGgcGCGGAg-- -3'
miRNA:   3'- caUGcGCUACGgGCUCuuCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 42327 0.66 0.928832
Target:  5'- -cGCGCGAagcUGCgaCGGGAguggAGCGGAgggGAg -3'
miRNA:   3'- caUGCGCU---ACGg-GCUCU----UCGCCUa--CU- -5'
29405 5' -54.6 NC_006151.1 + 27132 0.66 0.928832
Target:  5'- -gACgGCGAUGCCgCGAaaGAGGCGGu--- -3'
miRNA:   3'- caUG-CGCUACGG-GCU--CUUCGCCuacu -5'
29405 5' -54.6 NC_006151.1 + 76671 0.66 0.928832
Target:  5'- uGUGCGCGGU-CgCUGGGGAGCaGGggGGa -3'
miRNA:   3'- -CAUGCGCUAcG-GGCUCUUCG-CCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 125578 0.66 0.928832
Target:  5'- aUGCGCG-UGCCCGGcGAGcGCGGcacGUGc -3'
miRNA:   3'- cAUGCGCuACGGGCU-CUU-CGCC---UACu -5'
29405 5' -54.6 NC_006151.1 + 141310 0.66 0.925604
Target:  5'- cGUACGCGGgcggGUCCGGGAuggucaccgcguacGCGGgcGGg -3'
miRNA:   3'- -CAUGCGCUa---CGGGCUCUu-------------CGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 89830 0.66 0.923403
Target:  5'- -aGCGCGAUGCugCCGgcguAGgcGUGGGUGu -3'
miRNA:   3'- caUGCGCUACG--GGC----UCuuCGCCUACu -5'
29405 5' -54.6 NC_006151.1 + 38115 0.66 0.923403
Target:  5'- -gACGCGAUcCCCGGGGccggcccggccgAGCGGcgGc -3'
miRNA:   3'- caUGCGCUAcGGGCUCU------------UCGCCuaCu -5'
29405 5' -54.6 NC_006151.1 + 31951 0.67 0.917727
Target:  5'- -cGCGUGAUGaCgCCGGGGAcGCGGGa-- -3'
miRNA:   3'- caUGCGCUAC-G-GGCUCUU-CGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 84738 0.67 0.917727
Target:  5'- --uCGUGGUGCUCGAGGAGaCGGc--- -3'
miRNA:   3'- cauGCGCUACGGGCUCUUC-GCCuacu -5'
29405 5' -54.6 NC_006151.1 + 9700 0.67 0.917727
Target:  5'- -cGCG-GGUGCCCGGGAGaCGGGa-- -3'
miRNA:   3'- caUGCgCUACGGGCUCUUcGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 18762 0.67 0.917727
Target:  5'- -cACGgGGUGCCCGGGGcccgGGcCGGGg-- -3'
miRNA:   3'- caUGCgCUACGGGCUCU----UC-GCCUacu -5'
29405 5' -54.6 NC_006151.1 + 130270 0.67 0.911807
Target:  5'- -gGCGCGcgGcCCCGAGGccGCGGGc-- -3'
miRNA:   3'- caUGCGCuaC-GGGCUCUu-CGCCUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.