Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29405 | 5' | -54.6 | NC_006151.1 | + | 91542 | 0.66 | 0.938954 |
Target: 5'- cGUGCGCGAggUGCgCGGccAGCGGGg-- -3' miRNA: 3'- -CAUGCGCU--ACGgGCUcuUCGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 38115 | 0.66 | 0.923403 |
Target: 5'- -gACGCGAUcCCCGGGGccggcccggccgAGCGGcgGc -3' miRNA: 3'- caUGCGCUAcGGGCUCU------------UCGCCuaCu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 89830 | 0.66 | 0.923403 |
Target: 5'- -aGCGCGAUGCugCCGgcguAGgcGUGGGUGu -3' miRNA: 3'- caUGCGCUACG--GGC----UCuuCGCCUACu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 141310 | 0.66 | 0.925604 |
Target: 5'- cGUACGCGGgcggGUCCGGGAuggucaccgcguacGCGGgcGGg -3' miRNA: 3'- -CAUGCGCUa---CGGGCUCUu-------------CGCCuaCU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 27132 | 0.66 | 0.928832 |
Target: 5'- -gACgGCGAUGCCgCGAaaGAGGCGGu--- -3' miRNA: 3'- caUG-CGCUACGG-GCU--CUUCGCCuacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 42327 | 0.66 | 0.928832 |
Target: 5'- -cGCGCGAagcUGCgaCGGGAguggAGCGGAgggGAg -3' miRNA: 3'- caUGCGCU---ACGg-GCUCU----UCGCCUa--CU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 76671 | 0.66 | 0.928832 |
Target: 5'- uGUGCGCGGU-CgCUGGGGAGCaGGggGGa -3' miRNA: 3'- -CAUGCGCUAcG-GGCUCUUCG-CCuaCU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 125578 | 0.66 | 0.928832 |
Target: 5'- aUGCGCG-UGCCCGGcGAGcGCGGcacGUGc -3' miRNA: 3'- cAUGCGCuACGGGCU-CUU-CGCC---UACu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 105788 | 0.66 | 0.934016 |
Target: 5'- -cGCaCGGUGCgCGAGgcGCGGAg-- -3' miRNA: 3'- caUGcGCUACGgGCUCuuCGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 119836 | 0.66 | 0.934016 |
Target: 5'- cUGCGCGAcacGgUCGAGcAGGCGGcgGAc -3' miRNA: 3'- cAUGCGCUa--CgGGCUC-UUCGCCuaCU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 104827 | 0.66 | 0.938471 |
Target: 5'- -cGCGCGAcgGCCuCGccgcggcGGAGGCGGAc-- -3' miRNA: 3'- caUGCGCUa-CGG-GC-------UCUUCGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 30736 | 0.66 | 0.938954 |
Target: 5'- -cACGCGG-GCCCGGagugccgcgggcGggGCGGGg-- -3' miRNA: 3'- caUGCGCUaCGGGCU------------CuuCGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 121449 | 0.66 | 0.938954 |
Target: 5'- --uCGCuGGUGCCCGcGGAGCuGGggGGc -3' miRNA: 3'- cauGCG-CUACGGGCuCUUCG-CCuaCU- -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 54616 | 0.66 | 0.938954 |
Target: 5'- gGUGCGcCGGgcgcGCCCcgggGGGAAGCGGcgGc -3' miRNA: 3'- -CAUGC-GCUa---CGGG----CUCUUCGCCuaCu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 22843 | 0.66 | 0.943648 |
Target: 5'- -aGCGCGcUGCCCaGGAAGCccaGGAg-- -3' miRNA: 3'- caUGCGCuACGGGcUCUUCG---CCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 31951 | 0.67 | 0.917727 |
Target: 5'- -cGCGUGAUGaCgCCGGGGAcGCGGGa-- -3' miRNA: 3'- caUGCGCUAC-G-GGCUCUU-CGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 84738 | 0.67 | 0.917727 |
Target: 5'- --uCGUGGUGCUCGAGGAGaCGGc--- -3' miRNA: 3'- cauGCGCUACGGGCUCUUC-GCCuacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 9700 | 0.67 | 0.917727 |
Target: 5'- -cGCG-GGUGCCCGGGAGaCGGGa-- -3' miRNA: 3'- caUGCgCUACGGGCUCUUcGCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 18762 | 0.67 | 0.917727 |
Target: 5'- -cACGgGGUGCCCGGGGcccgGGcCGGGg-- -3' miRNA: 3'- caUGCgCUACGGGCUCU----UC-GCCUacu -5' |
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29405 | 5' | -54.6 | NC_006151.1 | + | 130270 | 0.67 | 0.911807 |
Target: 5'- -gGCGCGcgGcCCCGAGGccGCGGGc-- -3' miRNA: 3'- caUGCGCuaC-GGGCUCUu-CGCCUacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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