miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29405 5' -54.6 NC_006151.1 + 84387 0.71 0.728909
Target:  5'- -cGCGCGggGacgggCGGGGAGCGGGUGGg -3'
miRNA:   3'- caUGCGCuaCgg---GCUCUUCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 24307 0.71 0.738849
Target:  5'- --uCGgGGUGCaccCCGAGGGcGCGGAUGAg -3'
miRNA:   3'- cauGCgCUACG---GGCUCUU-CGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 34610 0.7 0.748692
Target:  5'- -cGCGCGccgaGCgCGAGgcGCGGGUGGg -3'
miRNA:   3'- caUGCGCua--CGgGCUCuuCGCCUACU- -5'
29405 5' -54.6 NC_006151.1 + 28873 0.7 0.758431
Target:  5'- -gGCGCGuc-CCCG-GAGGCGGGUGc -3'
miRNA:   3'- caUGCGCuacGGGCuCUUCGCCUACu -5'
29405 5' -54.6 NC_006151.1 + 28592 0.7 0.758431
Target:  5'- -gGCGCGuc-CCCG-GAGGCGGGUGc -3'
miRNA:   3'- caUGCGCuacGGGCuCUUCGCCUACu -5'
29405 5' -54.6 NC_006151.1 + 117145 0.7 0.762294
Target:  5'- gGUGCGCGAccaggcgcccgcuguUGCUCGAGAcGCGGuaGAa -3'
miRNA:   3'- -CAUGCGCU---------------ACGGGCUCUuCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 122220 0.7 0.777553
Target:  5'- cGUGCGCGGUGUgcuUCGAGGAGCuGugcGUGAc -3'
miRNA:   3'- -CAUGCGCUACG---GGCUCUUCGcC---UACU- -5'
29405 5' -54.6 NC_006151.1 + 52372 0.7 0.786919
Target:  5'- -gGCGCGcccccgggGCCCGcGGggGCGGcgGGc -3'
miRNA:   3'- caUGCGCua------CGGGC-UCuuCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 124078 0.69 0.796141
Target:  5'- cGUGCGCGcgGCCgCGAccGAGCGGGa-- -3'
miRNA:   3'- -CAUGCGCuaCGG-GCUc-UUCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 17125 0.69 0.80521
Target:  5'- -gGCgGCGGUGCUgCGGGAGGCGGccagGAg -3'
miRNA:   3'- caUG-CGCUACGG-GCUCUUCGCCua--CU- -5'
29405 5' -54.6 NC_006151.1 + 29412 0.68 0.848777
Target:  5'- -cGCGCGGagaaggcucggugugGCCgCGGGggGCGGcgGGg -3'
miRNA:   3'- caUGCGCUa--------------CGG-GCUCuuCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 38305 0.68 0.855949
Target:  5'- --cCGCGcgGCCCGGGcccGCGGAg-- -3'
miRNA:   3'- cauGCGCuaCGGGCUCuu-CGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 95918 0.68 0.855949
Target:  5'- -cGCGCGugcagucGCCCGAGGGcguGCGGuUGAa -3'
miRNA:   3'- caUGCGCua-----CGGGCUCUU---CGCCuACU- -5'
29405 5' -54.6 NC_006151.1 + 28943 0.68 0.855949
Target:  5'- -cACGUGG-GCCCGAGGGcCGGAucUGAu -3'
miRNA:   3'- caUGCGCUaCGGGCUCUUcGCCU--ACU- -5'
29405 5' -54.6 NC_006151.1 + 89115 0.68 0.863718
Target:  5'- cUGCGCGAga-CCGAG-GGCGGcgGGa -3'
miRNA:   3'- cAUGCGCUacgGGCUCuUCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 65732 0.68 0.863718
Target:  5'- cUGCGCGcgGCCC-AGGAGcCGGGa-- -3'
miRNA:   3'- cAUGCGCuaCGGGcUCUUC-GCCUacu -5'
29405 5' -54.6 NC_006151.1 + 11791 0.68 0.863718
Target:  5'- -gGCGCGuggGCgaGAGggGCgGGGUGGg -3'
miRNA:   3'- caUGCGCua-CGggCUCuuCG-CCUACU- -5'
29405 5' -54.6 NC_006151.1 + 117237 0.68 0.866767
Target:  5'- -cGCGCGuccacgucggcggGCCCGAGgcGCGGGc-- -3'
miRNA:   3'- caUGCGCua-----------CGGGCUCuuCGCCUacu -5'
29405 5' -54.6 NC_006151.1 + 30625 0.68 0.871274
Target:  5'- cGUGCGCGcUGUgCGGGuGGGUGGggGAg -3'
miRNA:   3'- -CAUGCGCuACGgGCUC-UUCGCCuaCU- -5'
29405 5' -54.6 NC_006151.1 + 45582 0.68 0.871274
Target:  5'- --cCGgGAcgGCCCGAGggGgCGGggGGa -3'
miRNA:   3'- cauGCgCUa-CGGGCUCuuC-GCCuaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.