miRNA display CGI


Results 1 - 20 of 440 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29406 3' -65.1 NC_006151.1 + 114916 1.09 0.000483
Target:  5'- gCGCACGGCCCCGGCGUCGCGCUCGGCc -3'
miRNA:   3'- -GCGUGCCGGGGCCGCAGCGCGAGCCG- -5'
29406 3' -65.1 NC_006151.1 + 57243 0.87 0.021337
Target:  5'- gCGCGCGGCCUCGGCGUC-CGCgCGGCc -3'
miRNA:   3'- -GCGUGCCGGGGCCGCAGcGCGaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 24652 0.83 0.039468
Target:  5'- aGCACGGCccggaucacgcaCCCGGCGUCGCGCauguccagCGGCc -3'
miRNA:   3'- gCGUGCCG------------GGGCCGCAGCGCGa-------GCCG- -5'
29406 3' -65.1 NC_006151.1 + 66553 0.82 0.043369
Target:  5'- gCGCGCGGCCgcgccgccguggacCCGGCGcUCGCGCgcgCGGCc -3'
miRNA:   3'- -GCGUGCCGG--------------GGCCGC-AGCGCGa--GCCG- -5'
29406 3' -65.1 NC_006151.1 + 130271 0.82 0.045981
Target:  5'- gCGCGCGGCCCCgaggccgcgGGCG-CGCGC-CGGCc -3'
miRNA:   3'- -GCGUGCCGGGG---------CCGCaGCGCGaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 54401 0.81 0.053132
Target:  5'- gCGCGCGGCCUCGGCGcCgaggcgcuggcgcgGCGCuUCGGCg -3'
miRNA:   3'- -GCGUGCCGGGGCCGCaG--------------CGCG-AGCCG- -5'
29406 3' -65.1 NC_006151.1 + 2330 0.81 0.056314
Target:  5'- gGgGCGGCCUCGGCGUCGgGCUccagcagcgccgCGGCg -3'
miRNA:   3'- gCgUGCCGGGGCCGCAGCgCGA------------GCCG- -5'
29406 3' -65.1 NC_006151.1 + 74447 0.8 0.06551
Target:  5'- aCGCGCaGCUCCGGCag-GCGCUCGGCg -3'
miRNA:   3'- -GCGUGcCGGGGCCGcagCGCGAGCCG- -5'
29406 3' -65.1 NC_006151.1 + 50406 0.8 0.068885
Target:  5'- uCGCGCGGCCCCcccgacgaggaGGCGccccugCGCGC-CGGCg -3'
miRNA:   3'- -GCGUGCCGGGG-----------CCGCa-----GCGCGaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 81355 0.78 0.084344
Target:  5'- cCGCGCccggGGCCCCGGCGggcgccagcgcgagcCGCGCcgCGGCg -3'
miRNA:   3'- -GCGUG----CCGGGGCCGCa--------------GCGCGa-GCCG- -5'
29406 3' -65.1 NC_006151.1 + 56598 0.78 0.09292
Target:  5'- gCGgACGcGCCCCGGCGgCGCGCUCaccGCg -3'
miRNA:   3'- -GCgUGC-CGGGGCCGCaGCGCGAGc--CG- -5'
29406 3' -65.1 NC_006151.1 + 55457 0.77 0.099826
Target:  5'- cCGC-CGGCCCCgccggggGGCG-CGCGCcCGGCg -3'
miRNA:   3'- -GCGuGCCGGGG-------CCGCaGCGCGaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 67984 0.77 0.10257
Target:  5'- uCGCgGCGGCCcgCCGGCGcCGCggccacggGCUCGGCg -3'
miRNA:   3'- -GCG-UGCCGG--GGCCGCaGCG--------CGAGCCG- -5'
29406 3' -65.1 NC_006151.1 + 67749 0.77 0.10257
Target:  5'- gCGCgGCGGCCCCgucggggugcGGCGUCGCGUUgagGGCg -3'
miRNA:   3'- -GCG-UGCCGGGG----------CCGCAGCGCGAg--CCG- -5'
29406 3' -65.1 NC_006151.1 + 135833 0.77 0.105126
Target:  5'- gCGCGCcGCCCCGGCGUCaCGUUCuGCc -3'
miRNA:   3'- -GCGUGcCGGGGCCGCAGcGCGAGcCG- -5'
29406 3' -65.1 NC_006151.1 + 104171 0.77 0.107742
Target:  5'- uGCGCcccGCCgCCGaGCG-CGCGCUCGGCg -3'
miRNA:   3'- gCGUGc--CGG-GGC-CGCaGCGCGAGCCG- -5'
29406 3' -65.1 NC_006151.1 + 131562 0.77 0.110419
Target:  5'- cCGCACgGGCCCC-GCGUCGCucaugguggucGCUgCGGCa -3'
miRNA:   3'- -GCGUG-CCGGGGcCGCAGCG-----------CGA-GCCG- -5'
29406 3' -65.1 NC_006151.1 + 40571 0.77 0.113158
Target:  5'- gGCgGCGGCCgCGGCGgaGgGCUCGGCg -3'
miRNA:   3'- gCG-UGCCGGgGCCGCagCgCGAGCCG- -5'
29406 3' -65.1 NC_006151.1 + 81528 0.77 0.113158
Target:  5'- aGCucgGCGGCCgCGGCGgCGCGCUCcGCg -3'
miRNA:   3'- gCG---UGCCGGgGCCGCaGCGCGAGcCG- -5'
29406 3' -65.1 NC_006151.1 + 130371 0.76 0.115961
Target:  5'- cCGCGCGcGCCgCGGCGUCcaGCGCgaaGGCc -3'
miRNA:   3'- -GCGUGC-CGGgGCCGCAG--CGCGag-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.