miRNA display CGI


Results 1 - 20 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29406 3' -65.1 NC_006151.1 + 659 0.69 0.349271
Target:  5'- gGCGCGGCCggGGCGggcucCGCGgaucgcaUCGGCg -3'
miRNA:   3'- gCGUGCCGGggCCGCa----GCGCg------AGCCG- -5'
29406 3' -65.1 NC_006151.1 + 2178 0.71 0.261548
Target:  5'- gGC-CGGCCCCGGCGcccgaggcccccgCGgGC-CGGUg -3'
miRNA:   3'- gCGuGCCGGGGCCGCa------------GCgCGaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 2276 0.72 0.225364
Target:  5'- aGCACGGCC--GGCGggGCGCccgCGGCg -3'
miRNA:   3'- gCGUGCCGGggCCGCagCGCGa--GCCG- -5'
29406 3' -65.1 NC_006151.1 + 2330 0.81 0.056314
Target:  5'- gGgGCGGCCUCGGCGUCGgGCUccagcagcgccgCGGCg -3'
miRNA:   3'- gCgUGCCGGGGCCGCAGCgCGA------------GCCG- -5'
29406 3' -65.1 NC_006151.1 + 2390 0.73 0.200857
Target:  5'- gGCA-GGCCCuCGGgGcCGCggaGCUCGGCg -3'
miRNA:   3'- gCGUgCCGGG-GCCgCaGCG---CGAGCCG- -5'
29406 3' -65.1 NC_006151.1 + 2585 0.71 0.263886
Target:  5'- aGCAC-GCgCUGGCGguaggCGCGCggCGGCa -3'
miRNA:   3'- gCGUGcCGgGGCCGCa----GCGCGa-GCCG- -5'
29406 3' -65.1 NC_006151.1 + 2659 0.73 0.196242
Target:  5'- gCGCACGuuGUCCUGGCGgcagaggCGCagcgGCUCGGCc -3'
miRNA:   3'- -GCGUGC--CGGGGCCGCa------GCG----CGAGCCG- -5'
29406 3' -65.1 NC_006151.1 + 2786 0.66 0.487602
Target:  5'- aGCucGCGGCaCCCGGgccaGCGCaCGGCg -3'
miRNA:   3'- gCG--UGCCG-GGGCCgcagCGCGaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 3137 0.7 0.288208
Target:  5'- gGCGCGGggcgcCCUCGGCGg---GCUCGGCg -3'
miRNA:   3'- gCGUGCC-----GGGGCCGCagcgCGAGCCG- -5'
29406 3' -65.1 NC_006151.1 + 3265 0.67 0.444061
Target:  5'- gCGcCGCGGCgCgCGGCGaugUGCGCcagggCGGCc -3'
miRNA:   3'- -GC-GUGCCGgG-GCCGCa--GCGCGa----GCCG- -5'
29406 3' -65.1 NC_006151.1 + 3472 0.67 0.435615
Target:  5'- gGCAUGGgCCCGaGCGg-GCGC-CGGa -3'
miRNA:   3'- gCGUGCCgGGGC-CGCagCGCGaGCCg -5'
29406 3' -65.1 NC_006151.1 + 3686 0.66 0.505578
Target:  5'- gGCG-GGCCCCGG-G-CGCGC--GGCg -3'
miRNA:   3'- gCGUgCCGGGGCCgCaGCGCGagCCG- -5'
29406 3' -65.1 NC_006151.1 + 3971 0.7 0.307583
Target:  5'- gCGCgGCGGCCUCGGCGagcCG-GCcgCGGCc -3'
miRNA:   3'- -GCG-UGCCGGGGCCGCa--GCgCGa-GCCG- -5'
29406 3' -65.1 NC_006151.1 + 4052 0.66 0.487602
Target:  5'- gGCGCgGGCCCCGuccacGCuGUaGCGCaccagCGGCg -3'
miRNA:   3'- gCGUG-CCGGGGC-----CG-CAgCGCGa----GCCG- -5'
29406 3' -65.1 NC_006151.1 + 4144 0.74 0.170461
Target:  5'- gGC-CGGCCCCGGgGaUCGCGUcgCGGa -3'
miRNA:   3'- gCGuGCCGGGGCCgC-AGCGCGa-GCCg -5'
29406 3' -65.1 NC_006151.1 + 4409 0.7 0.300366
Target:  5'- gGCGCGGCCCgGGUaggccauGUCGgCGUaggccCGGCg -3'
miRNA:   3'- gCGUGCCGGGgCCG-------CAGC-GCGa----GCCG- -5'
29406 3' -65.1 NC_006151.1 + 4495 0.67 0.478728
Target:  5'- -uCAUGGCCaCGGCGcucacCGCGUgCGGCa -3'
miRNA:   3'- gcGUGCCGGgGCCGCa----GCGCGaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 4542 0.68 0.40279
Target:  5'- uGgGCGGCCauGGCGUCcccgauGUGCggcagCGGCg -3'
miRNA:   3'- gCgUGCCGGggCCGCAG------CGCGa----GCCG- -5'
29406 3' -65.1 NC_006151.1 + 4782 0.7 0.301016
Target:  5'- gGCACGGgCCCGGC--CGCGgCgCGGUa -3'
miRNA:   3'- gCGUGCCgGGGCCGcaGCGC-GaGCCG- -5'
29406 3' -65.1 NC_006151.1 + 4851 0.67 0.478728
Target:  5'- uCGCGgGaGuCCCCGGCGcCGCcguaGCggacgCGGCc -3'
miRNA:   3'- -GCGUgC-C-GGGGCCGCaGCG----CGa----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.