miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29406 5' -53.5 NC_006151.1 + 114951 1.15 0.002308
Target:  5'- uGGGCGCGAUGAUGACGUAGGACACGCg -3'
miRNA:   3'- -CCCGCGCUACUACUGCAUCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 89968 0.86 0.150672
Target:  5'- cGGGCGCGGcUGgcGACGUAGGuGCACGUg -3'
miRNA:   3'- -CCCGCGCU-ACuaCUGCAUCC-UGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 99899 0.83 0.248725
Target:  5'- uGGCGCaGGUGcUGACGUGGG-CGCGCg -3'
miRNA:   3'- cCCGCG-CUACuACUGCAUCCuGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 84412 0.82 0.280344
Target:  5'- uGGGCGCGGUGAUaaGGCGgcgcgcGGcGGCGCGCg -3'
miRNA:   3'- -CCCGCGCUACUA--CUGCa-----UC-CUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 139646 0.81 0.3224
Target:  5'- cGGCGCGggGGUcGCGgcGGGCGCGCc -3'
miRNA:   3'- cCCGCGCuaCUAcUGCauCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 27517 0.8 0.337429
Target:  5'- gGGGUGCGAUGggGGCGUGGGGgGgGg -3'
miRNA:   3'- -CCCGCGCUACuaCUGCAUCCUgUgCg -5'
29406 5' -53.5 NC_006151.1 + 96602 0.8 0.352961
Target:  5'- cGGGCGCGGgcgcGccGACGUcgugcccgAGGGCGCGCa -3'
miRNA:   3'- -CCCGCGCUa---CuaCUGCA--------UCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 51155 0.79 0.40252
Target:  5'- cGGGCcgguacgcgGUGAUGGUGACGUgcAGGGCcCGCu -3'
miRNA:   3'- -CCCG---------CGCUACUACUGCA--UCCUGuGCG- -5'
29406 5' -53.5 NC_006151.1 + 75434 0.78 0.428899
Target:  5'- uGGGCGCGAagcUGccGGCGUGGcGCGCGUa -3'
miRNA:   3'- -CCCGCGCU---ACuaCUGCAUCcUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 26911 0.78 0.437916
Target:  5'- cGGGCccuCGAUGAccGGCGgggagAGGACGCGCg -3'
miRNA:   3'- -CCCGc--GCUACUa-CUGCa----UCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 112055 0.78 0.456271
Target:  5'- cGGGCgGCGgcGGUgGugGUGGGGCugGUg -3'
miRNA:   3'- -CCCG-CGCuaCUA-CugCAUCCUGugCG- -5'
29406 5' -53.5 NC_006151.1 + 111335 0.78 0.456271
Target:  5'- cGGGCGaGAUGAcggucgGGCGgauGGGCGCGCg -3'
miRNA:   3'- -CCCGCgCUACUa-----CUGCau-CCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 77923 0.77 0.494169
Target:  5'- cGGcCGUGGUGGUGAagGgcGGGCGCGCg -3'
miRNA:   3'- cCC-GCGCUACUACUg-CauCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 64498 0.77 0.513651
Target:  5'- cGGGCGCG-----GGCGgcGGGCGCGCg -3'
miRNA:   3'- -CCCGCGCuacuaCUGCauCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 20303 0.76 0.540431
Target:  5'- cGGGCGCccgccGUGGCGUuggcggcggcgagcAGGACGCGCg -3'
miRNA:   3'- -CCCGCGcuac-UACUGCA--------------UCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 31944 0.76 0.563606
Target:  5'- gGGGUcccGCG-UGAUGACGccgGGGACGCGg -3'
miRNA:   3'- -CCCG---CGCuACUACUGCa--UCCUGUGCg -5'
29406 5' -53.5 NC_006151.1 + 57655 0.75 0.582947
Target:  5'- -aGCGCGAUGAcgcUGugGUAcgccuccGGGCACGUg -3'
miRNA:   3'- ccCGCGCUACU---ACugCAU-------CCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 90756 0.75 0.583969
Target:  5'- gGGGCgGCGGgcacGGUGGCGgggucggcGGGCGCGCa -3'
miRNA:   3'- -CCCG-CGCUa---CUACUGCau------CCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 90676 0.74 0.625059
Target:  5'- cGGGCcgcuugucccccGCGgcGggGGCGgcGGACGCGCc -3'
miRNA:   3'- -CCCG------------CGCuaCuaCUGCauCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 134996 0.74 0.625059
Target:  5'- cGGGCGCGucu-UGGCG-GGGGCGCGg -3'
miRNA:   3'- -CCCGCGCuacuACUGCaUCCUGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.