miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29406 5' -53.5 NC_006151.1 + 3135 0.67 0.950624
Target:  5'- cGGGCGCGggGcgcccuCGgcGGGCucgGCGCa -3'
miRNA:   3'- -CCCGCGCuaCuacu--GCauCCUG---UGCG- -5'
29406 5' -53.5 NC_006151.1 + 3245 0.67 0.946345
Target:  5'- cGGCGCGGcggcgGAgcggGGCGccGcGGCGCGCg -3'
miRNA:   3'- cCCGCGCUa----CUa---CUGCauC-CUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 3944 0.71 0.802945
Target:  5'- cGGGCGCGGgcuccGcgGGCccGGGcCGCGCg -3'
miRNA:   3'- -CCCGCGCUa----CuaCUGcaUCCuGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 4085 0.66 0.974268
Target:  5'- cGGCGCcacGGUGcgGGCGacgAGGGCGacagagucCGCg -3'
miRNA:   3'- cCCGCG---CUACuaCUGCa--UCCUGU--------GCG- -5'
29406 5' -53.5 NC_006151.1 + 4224 0.67 0.954669
Target:  5'- gGGGCGCGG-GcgGGCGc-GGGCA-GCc -3'
miRNA:   3'- -CCCGCGCUaCuaCUGCauCCUGUgCG- -5'
29406 5' -53.5 NC_006151.1 + 4574 0.74 0.645667
Target:  5'- cGGCGgggucacgcugcCGGUGAUGAaggagccguggcCGUGGGGCGCGUg -3'
miRNA:   3'- cCCGC------------GCUACUACU------------GCAUCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 7056 0.71 0.820553
Target:  5'- uGGGCGCGcgGA-GGCGUcucccGCGCGCc -3'
miRNA:   3'- -CCCGCGCuaCUaCUGCAucc--UGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 7163 0.66 0.962071
Target:  5'- cGGGCGCGA----GGCGcaugcucGGCACGCg -3'
miRNA:   3'- -CCCGCGCUacuaCUGCauc----CUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 10944 0.69 0.883449
Target:  5'- uGGGCGCGcguguccguGUGAgaguuuacggUGugGUGGGuguCACGg -3'
miRNA:   3'- -CCCGCGC---------UACU----------ACugCAUCCu--GUGCg -5'
29406 5' -53.5 NC_006151.1 + 11753 0.69 0.879197
Target:  5'- gGGGUGCGGgcgaGUGAgCGUgcgcgaaggggggagAGGGCGCGUg -3'
miRNA:   3'- -CCCGCGCUac--UACU-GCA---------------UCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 11806 0.71 0.811831
Target:  5'- gGGGCGgGGUGggGugG-GGGGCG-GCg -3'
miRNA:   3'- -CCCGCgCUACuaCugCaUCCUGUgCG- -5'
29406 5' -53.5 NC_006151.1 + 12422 0.66 0.968589
Target:  5'- uGGGUGgGGUGA-GGCG-AGuGAC-CGCc -3'
miRNA:   3'- -CCCGCgCUACUaCUGCaUC-CUGuGCG- -5'
29406 5' -53.5 NC_006151.1 + 15870 0.71 0.8291
Target:  5'- aGGGCGgGAag--GACGccgcccgccggGGGACGCGCg -3'
miRNA:   3'- -CCCGCgCUacuaCUGCa----------UCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 18692 0.67 0.958483
Target:  5'- cGGGCGCGcgGgcGGCGccGGcgucGugACGCc -3'
miRNA:   3'- -CCCGCGCuaCuaCUGCa-UC----CugUGCG- -5'
29406 5' -53.5 NC_006151.1 + 19071 0.7 0.837466
Target:  5'- cGGGCGCGcgcggGUGGUaGAUGcAGGGCuCGUa -3'
miRNA:   3'- -CCCGCGC-----UACUA-CUGCaUCCUGuGCG- -5'
29406 5' -53.5 NC_006151.1 + 20112 0.67 0.946345
Target:  5'- cGGGCGCcccGgcGACGgggcuggGGGGCGgGCg -3'
miRNA:   3'- -CCCGCGcuaCuaCUGCa------UCCUGUgCG- -5'
29406 5' -53.5 NC_006151.1 + 20303 0.76 0.540431
Target:  5'- cGGGCGCccgccGUGGCGUuggcggcggcgagcAGGACGCGCg -3'
miRNA:   3'- -CCCGCGcuac-UACUGCA--------------UCCUGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 20454 0.69 0.883449
Target:  5'- gGGGCuCGggGGUGGCGccggucccccgGGGGgGCGCg -3'
miRNA:   3'- -CCCGcGCuaCUACUGCa----------UCCUgUGCG- -5'
29406 5' -53.5 NC_006151.1 + 20524 0.68 0.926839
Target:  5'- cGGCGUGGUGAacacGGCGUccucggcgGGGuccacgACGCGCa -3'
miRNA:   3'- cCCGCGCUACUa---CUGCA--------UCC------UGUGCG- -5'
29406 5' -53.5 NC_006151.1 + 20753 0.7 0.858314
Target:  5'- cGGCGCGccuccaccGCGgcGGACGCGCg -3'
miRNA:   3'- cCCGCGCuacuac--UGCauCCUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.