miRNA display CGI


Results 21 - 40 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29407 5' -62.3 NC_006151.1 + 11215 0.71 0.343265
Target:  5'- gCGUCCGgGAaggcuucucccGgGCCGCGAGGGCCg- -3'
miRNA:   3'- aGCGGGCaCU-----------CgCGGCGCUUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 15915 0.66 0.6196
Target:  5'- -gGCCCGccgccGCcCCGUGAggcGGGCCUCg -3'
miRNA:   3'- agCGGGCacu--CGcGGCGCU---UCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 17099 0.69 0.44028
Target:  5'- gCGCCCGUcgGGGCGCCG--GGGGCUcCg -3'
miRNA:   3'- aGCGGGCA--CUCGCGGCgcUUCCGGaG- -5'
29407 5' -62.3 NC_006151.1 + 17319 0.68 0.503568
Target:  5'- cCGCCgGgGGGCGCCGCGucagcucguGcGUCUCg -3'
miRNA:   3'- aGCGGgCaCUCGCGGCGCuu-------C-CGGAG- -5'
29407 5' -62.3 NC_006151.1 + 17720 0.66 0.609734
Target:  5'- gCGCCCGgGuGCGCCG---GGGCC-Ca -3'
miRNA:   3'- aGCGGGCaCuCGCGGCgcuUCCGGaG- -5'
29407 5' -62.3 NC_006151.1 + 19693 0.66 0.599883
Target:  5'- -gGCCgG-GGGUGCCucccucagggagGCGAGGGCCg- -3'
miRNA:   3'- agCGGgCaCUCGCGG------------CGCUUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 20115 0.7 0.376996
Target:  5'- gCGCCCcggcgacggggcuggGgggcGGGCGCCGCGggGGCg-- -3'
miRNA:   3'- aGCGGG---------------Ca---CUCGCGGCGCuuCCGgag -5'
29407 5' -62.3 NC_006151.1 + 20797 0.7 0.366025
Target:  5'- gCGCuuGcGcAGacaGCCGCgGAAGGCCUCg -3'
miRNA:   3'- aGCGggCaC-UCg--CGGCG-CUUCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 20914 0.67 0.551087
Target:  5'- gCGCCCGcUGuAGuUGCUcgGCGAGGGCCc- -3'
miRNA:   3'- aGCGGGC-AC-UC-GCGG--CGCUUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 21327 0.68 0.466873
Target:  5'- aCGCCCG---GCGCgGCGggGGUC-Cg -3'
miRNA:   3'- aGCGGGCacuCGCGgCGCuuCCGGaG- -5'
29407 5' -62.3 NC_006151.1 + 21534 0.69 0.44905
Target:  5'- uUCGgCCG-GGGCcgggGCCGgGGccuGGGCCUCg -3'
miRNA:   3'- -AGCgGGCaCUCG----CGGCgCU---UCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 21571 0.69 0.406207
Target:  5'- -aGCCCGccGAGgGCCGCGcGGGGUCg- -3'
miRNA:   3'- agCGGGCa-CUCgCGGCGC-UUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 22075 0.67 0.522381
Target:  5'- -gGCCaCGUGGGCGCgGUacguGGGCCg- -3'
miRNA:   3'- agCGG-GCACUCGCGgCGcu--UCCGGag -5'
29407 5' -62.3 NC_006151.1 + 23243 0.66 0.599883
Target:  5'- cUCGCCCucGGGgGCCuCGggGGCaUCg -3'
miRNA:   3'- -AGCGGGcaCUCgCGGcGCuuCCGgAG- -5'
29407 5' -62.3 NC_006151.1 + 24955 0.67 0.551087
Target:  5'- -gGUCCGUGAcgaugcGCGCCGC---GGCCUg -3'
miRNA:   3'- agCGGGCACU------CGCGGCGcuuCCGGAg -5'
29407 5' -62.3 NC_006151.1 + 27174 0.68 0.512939
Target:  5'- gCGCCgCGUGucggGGCGCCa-GggGGCCg- -3'
miRNA:   3'- aGCGG-GCAC----UCGCGGcgCuuCCGGag -5'
29407 5' -62.3 NC_006151.1 + 27291 0.67 0.551087
Target:  5'- gCGCCCGcgcuUGGGgGgCGUGggGGUCg- -3'
miRNA:   3'- aGCGGGC----ACUCgCgGCGCuuCCGGag -5'
29407 5' -62.3 NC_006151.1 + 28221 0.67 0.545304
Target:  5'- aUCGcCCCGUcgaGGGgGCCGggcCGAcgggcccauuggccgGGGCCUCa -3'
miRNA:   3'- -AGC-GGGCA---CUCgCGGC---GCU---------------UCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 30742 0.73 0.25665
Target:  5'- -gGCCCG-GAGUGCCGCGGgcgGGGCg-- -3'
miRNA:   3'- agCGGGCaCUCGCGGCGCU---UCCGgag -5'
29407 5' -62.3 NC_006151.1 + 33284 0.66 0.6196
Target:  5'- aUCGCCCGacccuuccccgGGGCGCgCGCGcguGGGaCCg- -3'
miRNA:   3'- -AGCGGGCa----------CUCGCG-GCGCu--UCC-GGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.