miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29407 5' -62.3 NC_006151.1 + 2102 0.66 0.590055
Target:  5'- -gGCCCGaGcGgGCCGCG-GGGCCg- -3'
miRNA:   3'- agCGGGCaCuCgCGGCGCuUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 2279 0.68 0.512939
Target:  5'- aCGgCCGgcgGGGCGcCCGCGgcGGCgaCg -3'
miRNA:   3'- aGCgGGCa--CUCGC-GGCGCuuCCGgaG- -5'
29407 5' -62.3 NC_006151.1 + 2309 0.69 0.457915
Target:  5'- gCGCCCG-GGGUcaGCaccaGCGGGgcGGCCUCg -3'
miRNA:   3'- aGCGGGCaCUCG--CGg---CGCUU--CCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 2531 0.66 0.6196
Target:  5'- -aGCCCGagcgcgGAGCGCUG-GcGGGCCa- -3'
miRNA:   3'- agCGGGCa-----CUCGCGGCgCuUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 2692 0.66 0.6196
Target:  5'- cUCGgcCCCG-GGGUGCaggcggGCGAaggAGGCCUCc -3'
miRNA:   3'- -AGC--GGGCaCUCGCGg-----CGCU---UCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 3395 0.74 0.21279
Target:  5'- cCGCCuCG-GAGgGCCGCGGcguguGGGUCUCg -3'
miRNA:   3'- aGCGG-GCaCUCgCGGCGCU-----UCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 3847 0.66 0.629475
Target:  5'- -gGCCCGga---GCCGgGGAGGCCg- -3'
miRNA:   3'- agCGGGCacucgCGGCgCUUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 3961 0.67 0.560765
Target:  5'- -gGCCCG-GGcCG-CGCGgcGGCCUCg -3'
miRNA:   3'- agCGGGCaCUcGCgGCGCuuCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 4268 0.69 0.44028
Target:  5'- gCGCUCGagGA-CGCCGCGGcAGGCCa- -3'
miRNA:   3'- aGCGGGCa-CUcGCGGCGCU-UCCGGag -5'
29407 5' -62.3 NC_006151.1 + 4353 0.67 0.560765
Target:  5'- gCGCggaCGcGGGCGCa--GAGGGCCUCg -3'
miRNA:   3'- aGCGg--GCaCUCGCGgcgCUUCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 4700 0.69 0.452585
Target:  5'- cUCGCCgGcggccccgcuguagaUGAgGCGCa-CGAGGGCCUCg -3'
miRNA:   3'- -AGCGGgC---------------ACU-CGCGgcGCUUCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 5024 0.66 0.629475
Target:  5'- -gGCuCCG-GGGCcgggGCCGgGGAGGCCg- -3'
miRNA:   3'- agCG-GGCaCUCG----CGGCgCUUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 5724 0.66 0.590055
Target:  5'- gUGCUgGUG-GCGCCGgGGuccgAGGCCg- -3'
miRNA:   3'- aGCGGgCACuCGCGGCgCU----UCCGGag -5'
29407 5' -62.3 NC_006151.1 + 5869 0.74 0.21279
Target:  5'- gCGCCCG-GGGcCGCCGgGGGccccGGCCUCu -3'
miRNA:   3'- aGCGGGCaCUC-GCGGCgCUU----CCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 6127 0.69 0.44905
Target:  5'- -gGCCuCGUGGcuccggccGCgGCCGCGAGgacggcGGCCUCg -3'
miRNA:   3'- agCGG-GCACU--------CG-CGGCGCUU------CCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 7042 0.77 0.133814
Target:  5'- cUCGCCCGggccaaUGGGCG-CGCGGAGGCgUCu -3'
miRNA:   3'- -AGCGGGC------ACUCGCgGCGCUUCCGgAG- -5'
29407 5' -62.3 NC_006151.1 + 7264 0.66 0.609734
Target:  5'- cUCGCCCcacGUGGcCGCCcuCGGccaaugGGGCCUCa -3'
miRNA:   3'- -AGCGGG---CACUcGCGGc-GCU------UCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 8313 0.67 0.53189
Target:  5'- cCGCCCc-GAGCccccggGgCGCGcGGGCCUCg -3'
miRNA:   3'- aGCGGGcaCUCG------CgGCGCuUCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 9036 0.69 0.417944
Target:  5'- cCGCCCGccgGGGCGCCccgcgugcuccggggGCGccGGCCg- -3'
miRNA:   3'- aGCGGGCa--CUCGCGG---------------CGCuuCCGGag -5'
29407 5' -62.3 NC_006151.1 + 11026 0.66 0.629475
Target:  5'- cUCGCUCGccGGGCcgGCCGgcCGggGGCC-Cg -3'
miRNA:   3'- -AGCGGGCa-CUCG--CGGC--GCuuCCGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.