miRNA display CGI


Results 1 - 20 of 238 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29407 5' -62.3 NC_006151.1 + 114665 1.09 0.000668
Target:  5'- cUCGCCCGUGAGCGCCGCGAAGGCCUCg -3'
miRNA:   3'- -AGCGGGCACUCGCGGCGCUUCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 39139 0.82 0.057508
Target:  5'- gCGCCCGgccuggGAcccGCGCCGCGgcGGCCUCu -3'
miRNA:   3'- aGCGGGCa-----CU---CGCGGCGCuuCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 96330 0.79 0.106686
Target:  5'- gCGCgCGUaGAGCGCCGgGuAGGCCUCc -3'
miRNA:   3'- aGCGgGCA-CUCGCGGCgCuUCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 7042 0.77 0.133814
Target:  5'- cUCGCCCGggccaaUGGGCG-CGCGGAGGCgUCu -3'
miRNA:   3'- -AGCGGGC------ACUCGCgGCGCUUCCGgAG- -5'
29407 5' -62.3 NC_006151.1 + 122779 0.77 0.137193
Target:  5'- cUGCUCGUGGGCgGCUGCGc-GGCCUCg -3'
miRNA:   3'- aGCGGGCACUCG-CGGCGCuuCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 57465 0.77 0.144188
Target:  5'- -gGCCagGUGccGCGCCGCGgcGGCCUCg -3'
miRNA:   3'- agCGGg-CACu-CGCGGCGCuuCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 134792 0.76 0.155293
Target:  5'- -gGCCUGUGAG-GCCGCGgcGGCC-Cg -3'
miRNA:   3'- agCGGGCACUCgCGGCGCuuCCGGaG- -5'
29407 5' -62.3 NC_006151.1 + 112582 0.76 0.171302
Target:  5'- cUCGCCCGcGGGCuUCGUGGAGGCCg- -3'
miRNA:   3'- -AGCGGGCaCUCGcGGCGCUUCCGGag -5'
29407 5' -62.3 NC_006151.1 + 52473 0.75 0.179848
Target:  5'- gCGCCgGUaGGcCGCCGUGAcGGCCUCg -3'
miRNA:   3'- aGCGGgCAcUC-GCGGCGCUuCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 35227 0.75 0.179848
Target:  5'- -gGCCCGggcGAGCcgagauggccGCCGCGggGGCCg- -3'
miRNA:   3'- agCGGGCa--CUCG----------CGGCGCuuCCGGag -5'
29407 5' -62.3 NC_006151.1 + 76238 0.75 0.184261
Target:  5'- cUCGCCCGaGAugaGCC-CGAGGGCCUCg -3'
miRNA:   3'- -AGCGGGCaCUcg-CGGcGCUUCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 40051 0.75 0.193375
Target:  5'- -gGCgCCGUGgagacccaccGGC-CCGCGggGGCCUCg -3'
miRNA:   3'- agCG-GGCAC----------UCGcGGCGCuuCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 84539 0.74 0.207289
Target:  5'- uUC-CCCGUGGGCuucuggGCCcgcccgggcuucaGCGAGGGCCUCg -3'
miRNA:   3'- -AGcGGGCACUCG------CGG-------------CGCUUCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 87307 0.74 0.207784
Target:  5'- cUCGCCCGUGGcgcaCGCCGUGccGGCgCUCc -3'
miRNA:   3'- -AGCGGGCACUc---GCGGCGCuuCCG-GAG- -5'
29407 5' -62.3 NC_006151.1 + 85114 0.74 0.207784
Target:  5'- gCGCUCGaGAGCGCCGCGcuGuGCCUg -3'
miRNA:   3'- aGCGGGCaCUCGCGGCGCuuC-CGGAg -5'
29407 5' -62.3 NC_006151.1 + 55480 0.74 0.207784
Target:  5'- gCGCCCG---GCGCCGCGGAcGGCCa- -3'
miRNA:   3'- aGCGGGCacuCGCGGCGCUU-CCGGag -5'
29407 5' -62.3 NC_006151.1 + 52617 0.74 0.207784
Target:  5'- gUCGUCgCGcagGAcgGCCGCGAAGGCCUCg -3'
miRNA:   3'- -AGCGG-GCa--CUcgCGGCGCUUCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 3395 0.74 0.21279
Target:  5'- cCGCCuCG-GAGgGCCGCGGcguguGGGUCUCg -3'
miRNA:   3'- aGCGG-GCaCUCgCGGCGCU-----UCCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 5869 0.74 0.21279
Target:  5'- gCGCCCG-GGGcCGCCGgGGGccccGGCCUCu -3'
miRNA:   3'- aGCGGGCaCUC-GCGGCgCUU----CCGGAG- -5'
29407 5' -62.3 NC_006151.1 + 139611 0.74 0.217899
Target:  5'- -gGCCCGUccGGGCGCgGCuGggGGCCa- -3'
miRNA:   3'- agCGGGCA--CUCGCGgCG-CuuCCGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.