miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29408 3' -56.6 NC_006151.1 + 114351 1.09 0.002735
Target:  5'- gCUCUUCUUCGAGGACCCCGACGCGCAg -3'
miRNA:   3'- -GAGAAGAAGCUCCUGGGGCUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 84567 0.84 0.114079
Target:  5'- -gCUUCagCGAGGGCCUCGACGCGCGc -3'
miRNA:   3'- gaGAAGaaGCUCCUGGGGCUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 126452 0.76 0.374838
Target:  5'- cCUCgagagCGAGGACCCCGACGCc-- -3'
miRNA:   3'- -GAGaagaaGCUCCUGGGGCUGCGcgu -5'
29408 3' -56.6 NC_006151.1 + 81586 0.74 0.4435
Target:  5'- uCUCgcgCgcgUCGccGGGGCCgCCGGCGCGCAg -3'
miRNA:   3'- -GAGaa-Ga--AGC--UCCUGG-GGCUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 126019 0.73 0.489832
Target:  5'- -aCUUCUUCcAGGGCCUCGGCGaCGUg -3'
miRNA:   3'- gaGAAGAAGcUCCUGGGGCUGC-GCGu -5'
29408 3' -56.6 NC_006151.1 + 134356 0.71 0.598423
Target:  5'- -cCUUCUUCGAGGucuuuGCgCCGAaGCGCGa -3'
miRNA:   3'- gaGAAGAAGCUCC-----UGgGGCUgCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 21039 0.71 0.608568
Target:  5'- ----cCUgaaGAGGAcgcCCCCGACGCGCGg -3'
miRNA:   3'- gagaaGAag-CUCCU---GGGGCUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 78205 0.71 0.618731
Target:  5'- -cCUUCUUCGGgacGGGCUCCacgucgcucacgGGCGCGCAg -3'
miRNA:   3'- gaGAAGAAGCU---CCUGGGG------------CUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 83017 0.71 0.636026
Target:  5'- -aCgcgCggCGAGGGCCCCaggucgacgguggaGACGCGCAg -3'
miRNA:   3'- gaGaa-GaaGCUCCUGGGG--------------CUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 98638 0.71 0.649248
Target:  5'- -cCUUCgaCGAGG-CCCUGGCGgGCGc -3'
miRNA:   3'- gaGAAGaaGCUCCuGGGGCUGCgCGU- -5'
29408 3' -56.6 NC_006151.1 + 96650 0.7 0.68971
Target:  5'- gCUCggCggCGAGGGCCCgGGCGaCGUc -3'
miRNA:   3'- -GAGaaGaaGCUCCUGGGgCUGC-GCGu -5'
29408 3' -56.6 NC_006151.1 + 81337 0.7 0.696728
Target:  5'- cCUCgUCcgUCGccgccgccgcgcccGGGGCCCCGGCGgGCGc -3'
miRNA:   3'- -GAGaAGa-AGC--------------UCCUGGGGCUGCgCGU- -5'
29408 3' -56.6 NC_006151.1 + 130195 0.7 0.699728
Target:  5'- ---gUCcUCGGGGugCCCGcugaggACGCGCAg -3'
miRNA:   3'- gagaAGaAGCUCCugGGGC------UGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 20542 0.69 0.729412
Target:  5'- gUCcUCggCGGGGuCCaCGACGCGCAg -3'
miRNA:   3'- gAGaAGaaGCUCCuGGgGCUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 102458 0.69 0.739152
Target:  5'- gCUCgagUC--CGGGGGCUCCuACGCGCAg -3'
miRNA:   3'- -GAGa--AGaaGCUCCUGGGGcUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 38681 0.69 0.739152
Target:  5'- -------cCGGGGGCCCCGGCGCaaGCGc -3'
miRNA:   3'- gagaagaaGCUCCUGGGGCUGCG--CGU- -5'
29408 3' -56.6 NC_006151.1 + 77868 0.69 0.739152
Target:  5'- ---cUCUUUGAcGGcauCCCCGGCGUGCGc -3'
miRNA:   3'- gagaAGAAGCU-CCu--GGGGCUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 67088 0.69 0.758347
Target:  5'- gCUCUUCUcCGAGGACgCgG-UGCGCc -3'
miRNA:   3'- -GAGAAGAaGCUCCUGgGgCuGCGCGu -5'
29408 3' -56.6 NC_006151.1 + 137608 0.68 0.767784
Target:  5'- aUCgggggcgCgggCGGGGACCCCGGCGCc-- -3'
miRNA:   3'- gAGaa-----Gaa-GCUCCUGGGGCUGCGcgu -5'
29408 3' -56.6 NC_006151.1 + 3668 0.68 0.767784
Target:  5'- cCUCgccgUCcccggggCGGcGGGCCCCgGGCGCGCGg -3'
miRNA:   3'- -GAGa---AGaa-----GCU-CCUGGGG-CUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.