miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29408 3' -56.6 NC_006151.1 + 2413 0.67 0.82159
Target:  5'- ---cUCggCGAGG-CCCCGGCGgcCGCAg -3'
miRNA:   3'- gagaAGaaGCUCCuGGGGCUGC--GCGU- -5'
29408 3' -56.6 NC_006151.1 + 3668 0.68 0.767784
Target:  5'- cCUCgccgUCcccggggCGGcGGGCCCCgGGCGCGCGg -3'
miRNA:   3'- -GAGa---AGaa-----GCU-CCUGGGG-CUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 20288 0.66 0.861838
Target:  5'- aUCUUCc-CG-GGGCCCCGG-GCGCc -3'
miRNA:   3'- gAGAAGaaGCuCCUGGGGCUgCGCGu -5'
29408 3' -56.6 NC_006151.1 + 20542 0.69 0.729412
Target:  5'- gUCcUCggCGGGGuCCaCGACGCGCAg -3'
miRNA:   3'- gAGaAGaaGCUCCuGGgGCUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 21039 0.71 0.608568
Target:  5'- ----cCUgaaGAGGAcgcCCCCGACGCGCGg -3'
miRNA:   3'- gagaaGAag-CUCCU---GGGGCUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 30343 0.68 0.804248
Target:  5'- -gCggCggcgCGAGGgcgcgaaaACCCCGACGCGCc -3'
miRNA:   3'- gaGaaGaa--GCUCC--------UGGGGCUGCGCGu -5'
29408 3' -56.6 NC_006151.1 + 32923 0.66 0.890397
Target:  5'- -cCUUCcccCGAGGACCCCgcucccgccuGugGUGCc -3'
miRNA:   3'- gaGAAGaa-GCUCCUGGGG----------CugCGCGu -5'
29408 3' -56.6 NC_006151.1 + 33990 0.67 0.83001
Target:  5'- aCUCUUUcccccgGAGGGgcgUCCCGGCGCGCc -3'
miRNA:   3'- -GAGAAGaag---CUCCU---GGGGCUGCGCGu -5'
29408 3' -56.6 NC_006151.1 + 38681 0.69 0.739152
Target:  5'- -------cCGGGGGCCCCGGCGCaaGCGc -3'
miRNA:   3'- gagaagaaGCUCCUGGGGCUGCG--CGU- -5'
29408 3' -56.6 NC_006151.1 + 39742 0.66 0.896987
Target:  5'- gCUCgggC-UCGGGGACCCgGACuuugacgcggGCGCc -3'
miRNA:   3'- -GAGaa-GaAGCUCCUGGGgCUG----------CGCGu -5'
29408 3' -56.6 NC_006151.1 + 55060 0.68 0.774319
Target:  5'- ---cUCggCGAGGACCCggcgggcucggccgCGGCGCGCc -3'
miRNA:   3'- gagaAGaaGCUCCUGGG--------------GCUGCGCGu -5'
29408 3' -56.6 NC_006151.1 + 55216 0.67 0.846308
Target:  5'- -cCgggCUUCGGGcaccacGGCgCCGGCGCGCAg -3'
miRNA:   3'- gaGaa-GAAGCUC------CUGgGGCUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 60867 0.66 0.896987
Target:  5'- -------aCGAGGACCCgCGGCagccGCGCAg -3'
miRNA:   3'- gagaagaaGCUCCUGGG-GCUG----CGCGU- -5'
29408 3' -56.6 NC_006151.1 + 64829 0.67 0.82159
Target:  5'- gCUCcUCcUCGAGGAuguCCCCGGCGaggGCc -3'
miRNA:   3'- -GAGaAGaAGCUCCU---GGGGCUGCg--CGu -5'
29408 3' -56.6 NC_006151.1 + 67088 0.69 0.758347
Target:  5'- gCUCUUCUcCGAGGACgCgG-UGCGCc -3'
miRNA:   3'- -GAGAAGAaGCUCCUGgGgCuGCGCGu -5'
29408 3' -56.6 NC_006151.1 + 70303 0.67 0.854172
Target:  5'- gCUCUUUgucgaCGAGGccaacuuuauacGCCCCGAugcCGUGCAg -3'
miRNA:   3'- -GAGAAGaa---GCUCC------------UGGGGCU---GCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 77868 0.69 0.739152
Target:  5'- ---cUCUUUGAcGGcauCCCCGGCGUGCGc -3'
miRNA:   3'- gagaAGAAGCU-CCu--GGGGCUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 78205 0.71 0.618731
Target:  5'- -cCUUCUUCGGgacGGGCUCCacgucgcucacgGGCGCGCAg -3'
miRNA:   3'- gaGAAGAAGCU---CCUGGGG------------CUGCGCGU- -5'
29408 3' -56.6 NC_006151.1 + 81337 0.7 0.696728
Target:  5'- cCUCgUCcgUCGccgccgccgcgcccGGGGCCCCGGCGgGCGc -3'
miRNA:   3'- -GAGaAGa-AGC--------------UCCUGGGGCUGCgCGU- -5'
29408 3' -56.6 NC_006151.1 + 81586 0.74 0.4435
Target:  5'- uCUCgcgCgcgUCGccGGGGCCgCCGGCGCGCAg -3'
miRNA:   3'- -GAGaa-Ga--AGC--UCCUGG-GGCUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.