Results 1 - 20 of 399 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 10435 | 0.65 | 0.572981 |
Target: 5'- gCCGAgGCCgGCGGggaGGGaggaggaggaggaCGCGGCGGCg -3' miRNA: 3'- -GGCU-CGG-CGCCgagCCC-------------GCGUCGCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 4344 | 0.65 | 0.572981 |
Target: 5'- nCGAaggcGgCGCGGacgCGGGCGCAGagggccuCGACg -3' miRNA: 3'- gGCU----CgGCGCCga-GCCCGCGUC-------GCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 111658 | 0.66 | 0.564381 |
Target: 5'- gCCGuGaUCGCGGCcagggGGGCGuCGGCGGg -3' miRNA: 3'- -GGCuC-GGCGCCGag---CCCGC-GUCGCUg -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 66862 | 0.66 | 0.564381 |
Target: 5'- -aGGGCCGgGGCggcgcgaaGGGCGCGccCGGCc -3' miRNA: 3'- ggCUCGGCgCCGag------CCCGCGUc-GCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 61772 | 0.66 | 0.564381 |
Target: 5'- gCCGugguGCUGCGGCgCGaGGC-CGGcCGGCu -3' miRNA: 3'- -GGCu---CGGCGCCGaGC-CCGcGUC-GCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 35476 | 0.66 | 0.562475 |
Target: 5'- gCCGgcGGCCGCcaucuugGGC-CGGGCaugcaaaGCAGaCGGCa -3' miRNA: 3'- -GGC--UCGGCG-------CCGaGCCCG-------CGUC-GCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 116316 | 0.66 | 0.554866 |
Target: 5'- cCCGAugacGCCGCGcucGCgCGGGCccGCGGCGu- -3' miRNA: 3'- -GGCU----CGGCGC---CGaGCCCG--CGUCGCug -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 106790 | 0.66 | 0.554866 |
Target: 5'- aCCuGGCCGCGGCggcggugcucgUCGGGgcccCGCuGGUGAUc -3' miRNA: 3'- -GGcUCGGCGCCG-----------AGCCC----GCG-UCGCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 126081 | 0.66 | 0.554866 |
Target: 5'- -gGGGCCGUGauCUCGGcCGuCGGCGGCa -3' miRNA: 3'- ggCUCGGCGCc-GAGCCcGC-GUCGCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 103993 | 0.66 | 0.554866 |
Target: 5'- gCG-GCCGUGGCggcCGuggaGGCGCGccgcGCGGCg -3' miRNA: 3'- gGCuCGGCGCCGa--GC----CCGCGU----CGCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 2628 | 0.66 | 0.564381 |
Target: 5'- uCCgGGGCC-CGGCgCGGGUGCucaccguguAGCGcACg -3' miRNA: 3'- -GG-CUCGGcGCCGaGCCCGCG---------UCGC-UG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 111987 | 0.66 | 0.564381 |
Target: 5'- gUGAGCggUGCGGCUacgacgucgaCGcGGCGgCGGCGAUu -3' miRNA: 3'- gGCUCG--GCGCCGA----------GC-CCGC-GUCGCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 120347 | 0.66 | 0.564381 |
Target: 5'- cCCGcguGGCCG-GGCUcgCGGGCGCcuaccAGCGcCc -3' miRNA: 3'- -GGC---UCGGCgCCGA--GCCCGCG-----UCGCuG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 720 | 0.66 | 0.564381 |
Target: 5'- aCCGGGgguCCGCGGg-CGGGgGCuuccgcuccGCGGCg -3' miRNA: 3'- -GGCUC---GGCGCCgaGCCCgCGu--------CGCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 98945 | 0.66 | 0.564381 |
Target: 5'- gCCGAG--GCGGCgCGGGCcGUggacgaGGCGGCg -3' miRNA: 3'- -GGCUCggCGCCGaGCCCG-CG------UCGCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 92108 | 0.66 | 0.564381 |
Target: 5'- cUCGGaCCGCGGCaucuUCGGGaacggccgcauCGCGcGCGGCg -3' miRNA: 3'- -GGCUcGGCGCCG----AGCCC-----------GCGU-CGCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 73922 | 0.66 | 0.564381 |
Target: 5'- aUGAGCa--GGC-CGuGGUGCAGCGAg -3' miRNA: 3'- gGCUCGgcgCCGaGC-CCGCGUCGCUg -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 19497 | 0.66 | 0.564381 |
Target: 5'- cCCGcuCCGgGGcCUCGGGgaCGCAggcGCGGCc -3' miRNA: 3'- -GGCucGGCgCC-GAGCCC--GCGU---CGCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 123946 | 0.66 | 0.564381 |
Target: 5'- gCCGAcGCC-CGGgaCGGGCGCcacccccaaCGACg -3' miRNA: 3'- -GGCU-CGGcGCCgaGCCCGCGuc-------GCUG- -5' |
|||||||
29409 | 3' | -64.1 | NC_006151.1 | + | 33934 | 0.66 | 0.554866 |
Target: 5'- aUCGAGgcCCGCgcgccccgggGGCUCGGG-GCGG-GACg -3' miRNA: 3'- -GGCUC--GGCG----------CCGAGCCCgCGUCgCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home