miRNA display CGI


Results 1 - 20 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 114142 1.09 0.000562
Target:  5'- gCCGAGCCGCGGCUCGGGCGCAGCGACc -3'
miRNA:   3'- -GGCUCGGCGCCGAGCCCGCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 97360 0.82 0.048369
Target:  5'- --aGGCCGCGGCggcggCGGGCGCGGCGGg -3'
miRNA:   3'- ggcUCGGCGCCGa----GCCCGCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 96800 0.81 0.059375
Target:  5'- cCCGAGCCGgGGCgcgCGGGCuuuUAGCGGCg -3'
miRNA:   3'- -GGCUCGGCgCCGa--GCCCGc--GUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 67996 0.81 0.062485
Target:  5'- gCCGGcGCCGCGGCcaCGGGCuCGGCGGCg -3'
miRNA:   3'- -GGCU-CGGCGCCGa-GCCCGcGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 139601 0.8 0.072788
Target:  5'- cCCGAGCgGCGGCccgucCGGGCGCGGCu-- -3'
miRNA:   3'- -GGCUCGgCGCCGa----GCCCGCGUCGcug -5'
29409 3' -64.1 NC_006151.1 + 30572 0.79 0.080543
Target:  5'- gCCGucCCGCGGCcccgUCGGGCGCAGgGAUc -3'
miRNA:   3'- -GGCucGGCGCCG----AGCCCGCGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 106671 0.79 0.089084
Target:  5'- gCGAgGCCGCGGCgcucggcgcgcCGGGCGCcGGCGACc -3'
miRNA:   3'- gGCU-CGGCGCCGa----------GCCCGCG-UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 4316 0.78 0.096047
Target:  5'- gCgGGGCaCGCGGC-CGGGCugcGCGGCGGCg -3'
miRNA:   3'- -GgCUCG-GCGCCGaGCCCG---CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 11233 0.77 0.108809
Target:  5'- cCCGGGCCGCGa---GGGcCGCGGCGGCg -3'
miRNA:   3'- -GGCUCGGCGCcgagCCC-GCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 97161 0.77 0.114346
Target:  5'- aCCGAGCCGCaGcGCUCGgcccGGCGCA-CGACg -3'
miRNA:   3'- -GGCUCGGCG-C-CGAGC----CCGCGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 40575 0.77 0.114346
Target:  5'- gCG-GCCGCGGCggaGGGCuCGGCGGCg -3'
miRNA:   3'- gGCuCGGCGCCGag-CCCGcGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 4790 0.77 0.123147
Target:  5'- cCCG-GCCGCGGCgcgguagCGGGCcGCGGCcuGGCg -3'
miRNA:   3'- -GGCuCGGCGCCGa------GCCCG-CGUCG--CUG- -5'
29409 3' -64.1 NC_006151.1 + 5332 0.77 0.123147
Target:  5'- gCCGcGGCCGCGGCggaGGGCGCccucuccggcGCGGCg -3'
miRNA:   3'- -GGC-UCGGCGCCGag-CCCGCGu---------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 131115 0.76 0.126218
Target:  5'- cCCG-GCCGCGGCgCGGGagGCcGCGGCg -3'
miRNA:   3'- -GGCuCGGCGCCGaGCCCg-CGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 20179 0.76 0.127466
Target:  5'- cCCGGGUCGCGGC-CGGuagaugcgauuccgcGCGCAGCGcCg -3'
miRNA:   3'- -GGCUCGGCGCCGaGCC---------------CGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 130925 0.76 0.12936
Target:  5'- gCCGGGcCCGCGGgggCGGGgGCGGCGGg -3'
miRNA:   3'- -GGCUC-GGCGCCga-GCCCgCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 20099 0.76 0.12936
Target:  5'- uUGGGCUGgGGgaCGGGCGCcccGGCGACg -3'
miRNA:   3'- gGCUCGGCgCCgaGCCCGCG---UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 64474 0.76 0.12936
Target:  5'- gCGccGCCGCGGCggggacgcccgCGGGCGCGgGCGGCg -3'
miRNA:   3'- gGCu-CGGCGCCGa----------GCCCGCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 77093 0.76 0.132574
Target:  5'- gCGAGCUGaaGCgCGGGCGCGGCGGg -3'
miRNA:   3'- gGCUCGGCgcCGaGCCCGCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 64532 0.76 0.132574
Target:  5'- ---cGCCGCGGCcgcgUCGGGgGCGGCGAg -3'
miRNA:   3'- ggcuCGGCGCCG----AGCCCgCGUCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.