miRNA display CGI


Results 21 - 40 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 141488 0.76 0.13388
Target:  5'- uCCGAGagccuCCGCGGCgaCGGGCGUcuccacgggggccgaGGCGACg -3'
miRNA:   3'- -GGCUC-----GGCGCCGa-GCCCGCG---------------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 127986 0.76 0.13388
Target:  5'- cUCGuGCgGCGGCUCcgcgucgcggucgcgGGGCgGCGGCGACg -3'
miRNA:   3'- -GGCuCGgCGCCGAG---------------CCCG-CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 34615 0.76 0.142661
Target:  5'- gCCGAGCgCGaGGCgCGGGUGgGGCGACc -3'
miRNA:   3'- -GGCUCG-GCgCCGaGCCCGCgUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 81204 0.76 0.142661
Target:  5'- gCCGGGCCGCaGUcCGGGCGcCGGCG-Cg -3'
miRNA:   3'- -GGCUCGGCGcCGaGCCCGC-GUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 89657 0.76 0.142661
Target:  5'- aCCGAGagguggCGCGuGCUCGGGCGCacaaagAGCGAg -3'
miRNA:   3'- -GGCUCg-----GCGC-CGAGCCCGCG------UCGCUg -5'
29409 3' -64.1 NC_006151.1 + 68272 0.75 0.146177
Target:  5'- aCG-GUCGCGGCgcCGGGCGCcacGGCGGCc -3'
miRNA:   3'- gGCuCGGCGCCGa-GCCCGCG---UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 112037 0.75 0.146177
Target:  5'- -gGAGCUGgGGCcggCGGGCggGCGGCGGCg -3'
miRNA:   3'- ggCUCGGCgCCGa--GCCCG--CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 15431 0.75 0.157203
Target:  5'- uCCGAGuuuagcuuCCGCGGCUCGGuGUGCgaGGaCGACg -3'
miRNA:   3'- -GGCUC--------GGCGCCGAGCC-CGCG--UC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 102598 0.75 0.161042
Target:  5'- gCGAGUCGCagcgGGCgcucgagCGGGCGC-GCGACg -3'
miRNA:   3'- gGCUCGGCG----CCGa------GCCCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 10194 0.75 0.161042
Target:  5'- gCCG-GUCGCGGCgCGGGCGgCGGCuGCa -3'
miRNA:   3'- -GGCuCGGCGCCGaGCCCGC-GUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 11692 0.75 0.161042
Target:  5'- aCgGGGCCGCGGgaCGGcGCGU-GCGGCg -3'
miRNA:   3'- -GgCUCGGCGCCgaGCC-CGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 103762 0.75 0.164966
Target:  5'- gCGcGCCGCGGCgcugcgcgagUCGGaGCGCuGGCGGCg -3'
miRNA:   3'- gGCuCGGCGCCG----------AGCC-CGCG-UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 5085 0.75 0.168975
Target:  5'- gCgGGGCCGCGGC--GGGCGcCGGCGGa -3'
miRNA:   3'- -GgCUCGGCGCCGagCCCGC-GUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 31757 0.75 0.168975
Target:  5'- aCGcGCCuGCGGCggCGGGCGCgcgccgGGCGGCu -3'
miRNA:   3'- gGCuCGG-CGCCGa-GCCCGCG------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 21309 0.74 0.173071
Target:  5'- aCCGAGCgGUGGCgCGagacgcccGGCGCGGCGGg -3'
miRNA:   3'- -GGCUCGgCGCCGaGC--------CCGCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 21472 0.74 0.177256
Target:  5'- cCCGcGUCGcCGGCUCGGGCa-GGCGGCc -3'
miRNA:   3'- -GGCuCGGC-GCCGAGCCCGcgUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 131062 0.74 0.18153
Target:  5'- gCCGucuccauGCCGCGGa--GGGCGC-GCGACa -3'
miRNA:   3'- -GGCu------CGGCGCCgagCCCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 19458 0.74 0.18153
Target:  5'- -gGAGCCGCGGCaccUCGGGCgGCAGguagucgcCGAUg -3'
miRNA:   3'- ggCUCGGCGCCG---AGCCCG-CGUC--------GCUG- -5'
29409 3' -64.1 NC_006151.1 + 69305 0.74 0.182396
Target:  5'- aCGGGCCGcCGGCgccacacgugcgCGGGCGCGucgccgcccgcgagcGCGGCg -3'
miRNA:   3'- gGCUCGGC-GCCGa-----------GCCCGCGU---------------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 69582 0.74 0.185896
Target:  5'- gCCGcGCCGCGacgaGCUCGGccGCGCGGCGcACc -3'
miRNA:   3'- -GGCuCGGCGC----CGAGCC--CGCGUCGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.