miRNA display CGI


Results 21 - 40 of 399 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 3942 0.71 0.300676
Target:  5'- gCCGGGCgcgggcucCGCgGGCcCGGGCcgcGCGGCGGCc -3'
miRNA:   3'- -GGCUCG--------GCG-CCGaGCCCG---CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 3989 0.68 0.454332
Target:  5'- gCCG-GCCGCGGCcacgUUGGcCGgGGCGAa -3'
miRNA:   3'- -GGCuCGGCGCCG----AGCCcGCgUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 4084 0.67 0.480852
Target:  5'- gCGGcGCCaCGGUgCGGGCGacgagGGCGACa -3'
miRNA:   3'- gGCU-CGGcGCCGaGCCCGCg----UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 4221 0.71 0.300676
Target:  5'- gCCGGGgCGCGGg-CGGGCGCgggcagccggAGCGGg -3'
miRNA:   3'- -GGCUCgGCGCCgaGCCCGCG----------UCGCUg -5'
29409 3' -64.1 NC_006151.1 + 4316 0.78 0.096047
Target:  5'- gCgGGGCaCGCGGC-CGGGCugcGCGGCGGCg -3'
miRNA:   3'- -GgCUCG-GCGCCGaGCCCG---CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 4344 0.65 0.572981
Target:  5'- nCGAaggcGgCGCGGacgCGGGCGCAGagggccuCGACg -3'
miRNA:   3'- gGCU----CgGCGCCga-GCCCGCGUC-------GCUG- -5'
29409 3' -64.1 NC_006151.1 + 4481 0.67 0.508102
Target:  5'- aUCGuAGCgGCGGCUCauggccacGGCGCucaccgcguGCGGCa -3'
miRNA:   3'- -GGC-UCGgCGCCGAGc-------CCGCGu--------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 4601 0.7 0.342224
Target:  5'- -gGAGCCGUGGCcgUgGGGCGCGuggaccCGGCg -3'
miRNA:   3'- ggCUCGGCGCCG--AgCCCGCGUc-----GCUG- -5'
29409 3' -64.1 NC_006151.1 + 4790 0.77 0.123147
Target:  5'- cCCG-GCCGCGGCgcgguagCGGGCcGCGGCcuGGCg -3'
miRNA:   3'- -GGCuCGGCGCCGa------GCCCG-CGUCG--CUG- -5'
29409 3' -64.1 NC_006151.1 + 4907 0.7 0.320947
Target:  5'- gCCGGGCCaG-GGCUCcccgagcgGGGUgaGCAGCGGCc -3'
miRNA:   3'- -GGCUCGG-CgCCGAG--------CCCG--CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 5027 0.71 0.300676
Target:  5'- uCCgGGGCCGgGGC-CGGGgaggcCGCGGCGGa -3'
miRNA:   3'- -GG-CUCGGCgCCGaGCCC-----GCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 5085 0.75 0.168975
Target:  5'- gCgGGGCCGCGGC--GGGCGcCGGCGGa -3'
miRNA:   3'- -GgCUCGGCGCCGagCCCGC-GUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 5234 0.7 0.320947
Target:  5'- gCCGAGCgccgCGCGGCggcggCGGGgGCccgGGgGGCg -3'
miRNA:   3'- -GGCUCG----GCGCCGa----GCCCgCG---UCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 5332 0.77 0.123147
Target:  5'- gCCGcGGCCGCGGCggaGGGCGCccucuccggcGCGGCg -3'
miRNA:   3'- -GGC-UCGGCGCCGag-CCCGCGu---------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 5416 0.69 0.383029
Target:  5'- gCCGAGuCCGUccucguccuucucggGGCcgCGGGCGacggucucgaCGGCGACg -3'
miRNA:   3'- -GGCUC-GGCG---------------CCGa-GCCCGC----------GUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 5506 0.72 0.257259
Target:  5'- -gGAGaCGgGGCUcCGGGCGCcaAGCGGCc -3'
miRNA:   3'- ggCUCgGCgCCGA-GCCCGCG--UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 5539 0.72 0.262541
Target:  5'- aUCGAGCCgccucGCGGCggCGGGCucgucgaGCAGgGGCu -3'
miRNA:   3'- -GGCUCGG-----CGCCGa-GCCCG-------CGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 5614 0.68 0.444808
Target:  5'- uCCGGcggagggggcgccGCCGCcGC-CGGGCGCcgagaccggcccGGCGGCg -3'
miRNA:   3'- -GGCU-------------CGGCGcCGaGCCCGCG------------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 5748 0.68 0.44567
Target:  5'- gCCGcGCCGcCGGCcCGGGCuCAcCGACc -3'
miRNA:   3'- -GGCuCGGC-GCCGaGCCCGcGUcGCUG- -5'
29409 3' -64.1 NC_006151.1 + 6076 0.67 0.471926
Target:  5'- cCCGAGCCcCGGCg-GGGCuGCuGCuGCu -3'
miRNA:   3'- -GGCUCGGcGCCGagCCCG-CGuCGcUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.