miRNA display CGI


Results 21 - 40 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 126081 0.66 0.554866
Target:  5'- -gGGGCCGUGauCUCGGcCGuCGGCGGCa -3'
miRNA:   3'- ggCUCGGCGCc-GAGCCcGC-GUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 106790 0.66 0.554866
Target:  5'- aCCuGGCCGCGGCggcggugcucgUCGGGgcccCGCuGGUGAUc -3'
miRNA:   3'- -GGcUCGGCGCCG-----------AGCCC----GCG-UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 116316 0.66 0.554866
Target:  5'- cCCGAugacGCCGCGcucGCgCGGGCccGCGGCGu- -3'
miRNA:   3'- -GGCU----CGGCGC---CGaGCCCG--CGUCGCug -5'
29409 3' -64.1 NC_006151.1 + 36036 0.66 0.553917
Target:  5'- cCCGGcGCCGCGGCUCcuccGGCGaggaucuccucuuCGGCccgGGCg -3'
miRNA:   3'- -GGCU-CGGCGCCGAGc---CCGC-------------GUCG---CUG- -5'
29409 3' -64.1 NC_006151.1 + 130680 0.66 0.553917
Target:  5'- gCGGGgCGCGGCgcaggaugucCGGGgGCccgacggGGCGGCc -3'
miRNA:   3'- gGCUCgGCGCCGa---------GCCCgCG-------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 104089 0.66 0.553917
Target:  5'- gCCGAGCagcacgccuucgaCGCGGCcgaguUCGuGCGCcugcGCGACg -3'
miRNA:   3'- -GGCUCG-------------GCGCCG-----AGCcCGCGu---CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 8247 0.66 0.545399
Target:  5'- -aGGGCCG-GGC-CGGcGCGCcGgGACg -3'
miRNA:   3'- ggCUCGGCgCCGaGCC-CGCGuCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 134236 0.66 0.545399
Target:  5'- aCGGGaUCGUGGacgCGGGCuuucGCGGCGAg -3'
miRNA:   3'- gGCUC-GGCGCCga-GCCCG----CGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 11312 0.66 0.545399
Target:  5'- cCCGGGCCGCcGCgauaccgcgCGGGCGauaccgcGCGGg -3'
miRNA:   3'- -GGCUCGGCGcCGa--------GCCCGCgu-----CGCUg -5'
29409 3' -64.1 NC_006151.1 + 27622 0.66 0.545399
Target:  5'- cCCGAGCC-CGGCcgccccgaCGGGUgGgGGUGGCu -3'
miRNA:   3'- -GGCUCGGcGCCGa-------GCCCG-CgUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 31237 0.66 0.545399
Target:  5'- gCCG-GCC-CGGCgagcgagCGGGCG-GGCGAg -3'
miRNA:   3'- -GGCuCGGcGCCGa------GCCCGCgUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 82421 0.66 0.545399
Target:  5'- cCCGAGaggCGCgGGCgcucgcgCGGGCGCuGC-ACa -3'
miRNA:   3'- -GGCUCg--GCG-CCGa------GCCCGCGuCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 90102 0.66 0.542569
Target:  5'- gCCGcaGGCCGCGGCgaCGcccaugacgaggcaGGCGgGGCGGu -3'
miRNA:   3'- -GGC--UCGGCGCCGa-GC--------------CCGCgUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 81777 0.66 0.542569
Target:  5'- aCCGGGaCGC-GCUCGGcGCGCccgucgaagagcccGGCGAa -3'
miRNA:   3'- -GGCUCgGCGcCGAGCC-CGCG--------------UCGCUg -5'
29409 3' -64.1 NC_006151.1 + 138198 0.66 0.539743
Target:  5'- cCCGuGCUGCGGCaccUcgacgcgcacuucaaCGGGCGC-GCGcACg -3'
miRNA:   3'- -GGCuCGGCGCCG---A---------------GCCCGCGuCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 102676 0.66 0.535984
Target:  5'- uUGAcGCCGUGGacgCGGGgGCgcccggcgcgGGCGGCg -3'
miRNA:   3'- gGCU-CGGCGCCga-GCCCgCG----------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 108762 0.66 0.535984
Target:  5'- gCGAGCCGUGGagaucaacCUCGGGacaucucccCGCGGCcccaguGGCg -3'
miRNA:   3'- gGCUCGGCGCC--------GAGCCC---------GCGUCG------CUG- -5'
29409 3' -64.1 NC_006151.1 + 66069 0.66 0.535984
Target:  5'- cCCGcggacGGCCGCcugGGCUuccacgCGGGCcuGCAGCGcGCg -3'
miRNA:   3'- -GGC-----UCGGCG---CCGA------GCCCG--CGUCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 135863 0.66 0.535984
Target:  5'- aCCGGGCaCGUGGCcagCGucCGCGuGCGGCc -3'
miRNA:   3'- -GGCUCG-GCGCCGa--GCccGCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 57238 0.66 0.535984
Target:  5'- gCGGcGCgCGCGGcCUCGGcguccGCGCGGCccucGACg -3'
miRNA:   3'- gGCU-CG-GCGCC-GAGCC-----CGCGUCG----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.