miRNA display CGI


Results 41 - 60 of 399 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 108762 0.66 0.535984
Target:  5'- gCGAGCCGUGGagaucaacCUCGGGacaucucccCGCGGCcccaguGGCg -3'
miRNA:   3'- gGCUCGGCGCC--------GAGCCC---------GCGUCG------CUG- -5'
29409 3' -64.1 NC_006151.1 + 66069 0.66 0.535984
Target:  5'- cCCGcggacGGCCGCcugGGCUuccacgCGGGCcuGCAGCGcGCg -3'
miRNA:   3'- -GGC-----UCGGCG---CCGA------GCCCG--CGUCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 135863 0.66 0.535984
Target:  5'- aCCGGGCaCGUGGCcagCGucCGCGuGCGGCc -3'
miRNA:   3'- -GGCUCG-GCGCCGa--GCccGCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 141993 0.66 0.535984
Target:  5'- cCCGGGaaaaagagCGCGGCgUgGGGCgGguGUGGCa -3'
miRNA:   3'- -GGCUCg-------GCGCCG-AgCCCG-CguCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 93567 0.66 0.535046
Target:  5'- ---cGCCGCGGgggCGGGCGCgccaaagAGCGGg -3'
miRNA:   3'- ggcuCGGCGCCga-GCCCGCG-------UCGCUg -5'
29409 3' -64.1 NC_006151.1 + 75246 0.66 0.52756
Target:  5'- gCCGAaggcgcacugcaccuCCGCgGGCUCcuGGCGCAGCGcCg -3'
miRNA:   3'- -GGCUc--------------GGCG-CCGAGc-CCGCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 91547 0.66 0.526627
Target:  5'- gCGAGgugCGCGGCcagCgGGGCGaUGGCGGCg -3'
miRNA:   3'- gGCUCg--GCGCCGa--G-CCCGC-GUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 2399 0.66 0.526627
Target:  5'- uCgGGGCCGCGgaGCUC-GGCGaggcccCGGCGGCc -3'
miRNA:   3'- -GgCUCGGCGC--CGAGcCCGC------GUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 22999 0.66 0.526627
Target:  5'- cUCG-GCCGCgcgGGUggGGGCGCgggggugguggaGGCGGCg -3'
miRNA:   3'- -GGCuCGGCG---CCGagCCCGCG------------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 78041 0.66 0.526627
Target:  5'- cCCG-GCgaCGCGGCgcaucUGGGCGaCGcGCGGCg -3'
miRNA:   3'- -GGCuCG--GCGCCGa----GCCCGC-GU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 100895 0.66 0.526627
Target:  5'- gCUGcGCCGCGGCgcgCGcGCGCc-CGACg -3'
miRNA:   3'- -GGCuCGGCGCCGa--GCcCGCGucGCUG- -5'
29409 3' -64.1 NC_006151.1 + 135114 0.66 0.526627
Target:  5'- nCGguAGCgCGCGGggCGGGCuggGCGGgGACg -3'
miRNA:   3'- gGC--UCG-GCGCCgaGCCCG---CGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 21516 0.66 0.526627
Target:  5'- aCCGGGgCG-GGCUCGGGCuuCGGcCGGg -3'
miRNA:   3'- -GGCUCgGCgCCGAGCCCGc-GUC-GCUg -5'
29409 3' -64.1 NC_006151.1 + 83120 0.66 0.526627
Target:  5'- gCCG-GUCGCaGaGCUCGGGCGCcuuguacGCGcCa -3'
miRNA:   3'- -GGCuCGGCG-C-CGAGCCCGCGu------CGCuG- -5'
29409 3' -64.1 NC_006151.1 + 119450 0.66 0.525694
Target:  5'- gUGGGCCGCGGCgacgUGGacgccguGCGCuacGUGGCc -3'
miRNA:   3'- gGCUCGGCGCCGa---GCC-------CGCGu--CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 113864 0.66 0.525694
Target:  5'- uUGAGCgacgGCGGCUCcugcGGCGCAagucgucggccgcGCGGCg -3'
miRNA:   3'- gGCUCGg---CGCCGAGc---CCGCGU-------------CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 104269 0.66 0.523831
Target:  5'- gCCGGcGCgGCGGCgggcccgccgcugcaGGcGCuGCAGCGGCu -3'
miRNA:   3'- -GGCU-CGgCGCCGag-------------CC-CG-CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 113078 0.66 0.523831
Target:  5'- aCGAGCgCGCGGCcgUCgccgccgccaccggGGGCGgGGCcGCg -3'
miRNA:   3'- gGCUCG-GCGCCG--AG--------------CCCGCgUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 134980 0.66 0.517331
Target:  5'- uCCGGGCCuucuCGGg-CGGGCGCgucuuGGCGGg -3'
miRNA:   3'- -GGCUCGGc---GCCgaGCCCGCG-----UCGCUg -5'
29409 3' -64.1 NC_006151.1 + 130953 0.66 0.517331
Target:  5'- -gGGGUCGCG---CGGGCGCGGgGGCc -3'
miRNA:   3'- ggCUCGGCGCcgaGCCCGCGUCgCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.