miRNA display CGI


Results 41 - 60 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 6138 0.7 0.342224
Target:  5'- uCCG-GCCGCGGCcgCGaGGa-CGGCGGCc -3'
miRNA:   3'- -GGCuCGGCGCCGa-GC-CCgcGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 6228 0.66 0.535984
Target:  5'- -gGAGCCGCGGCgcCGGGaGCccuGGCuGCc -3'
miRNA:   3'- ggCUCGGCGCCGa-GCCCgCG---UCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 6388 0.67 0.475486
Target:  5'- cCUGAGCga-GGC-CGGGCGCcgagcgcggagagcgGGCGGCg -3'
miRNA:   3'- -GGCUCGgcgCCGaGCCCGCG---------------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 8082 0.68 0.4371
Target:  5'- aCGGGgCGUGGCg-GGGCGUGGCa-- -3'
miRNA:   3'- gGCUCgGCGCCGagCCCGCGUCGcug -5'
29409 3' -64.1 NC_006151.1 + 8247 0.66 0.545399
Target:  5'- -aGGGCCG-GGC-CGGcGCGCcGgGACg -3'
miRNA:   3'- ggCUCGGCgCCGaGCC-CGCGuCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 9042 0.67 0.463085
Target:  5'- gCCGGGgcgccCCGCGuGCUCcggGGGCGcCGGcCGGCc -3'
miRNA:   3'- -GGCUC-----GGCGC-CGAG---CCCGC-GUC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 9487 0.72 0.257259
Target:  5'- cCCGcGGCCGCGGCgUGGGagaGCGG-GGCg -3'
miRNA:   3'- -GGC-UCGGCGCCGaGCCCg--CGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 10011 0.69 0.3645
Target:  5'- -aGAGCgGCGGCggCGGuCGCcGCGGCc -3'
miRNA:   3'- ggCUCGgCGCCGa-GCCcGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 10194 0.75 0.161042
Target:  5'- gCCG-GUCGCGGCgCGGGCGgCGGCuGCa -3'
miRNA:   3'- -GGCuCGGCGCCGaGCCCGC-GUCGcUG- -5'
29409 3' -64.1 NC_006151.1 + 10435 0.65 0.572981
Target:  5'- gCCGAgGCCgGCGGggaGGGaggaggaggaggaCGCGGCGGCg -3'
miRNA:   3'- -GGCU-CGG-CGCCgagCCC-------------GCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 11033 0.69 0.3645
Target:  5'- gCCGGGCCGgcCGGC-CGGGgGCccGGCcugGACg -3'
miRNA:   3'- -GGCUCGGC--GCCGaGCCCgCG--UCG---CUG- -5'
29409 3' -64.1 NC_006151.1 + 11066 0.67 0.504429
Target:  5'- gCGGGCCacacuguGCGGCggaccgugccaaguUUaGGGCGCuGCGACc -3'
miRNA:   3'- gGCUCGG-------CGCCG--------------AG-CCCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 11233 0.77 0.108809
Target:  5'- cCCGGGCCGCGa---GGGcCGCGGCGGCg -3'
miRNA:   3'- -GGCUCGGCGCcgagCCC-GCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 11312 0.66 0.545399
Target:  5'- cCCGGGCCGCcGCgauaccgcgCGGGCGauaccgcGCGGg -3'
miRNA:   3'- -GGCUCGGCGcCGa--------GCCCGCgu-----CGCUg -5'
29409 3' -64.1 NC_006151.1 + 11692 0.75 0.161042
Target:  5'- aCgGGGCCGCGGgaCGGcGCGU-GCGGCg -3'
miRNA:   3'- -GgCUCGGCGCCgaGCC-CGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 11809 0.67 0.480852
Target:  5'- gCGGGgUGgGGUg-GGGgGCGGCGGCg -3'
miRNA:   3'- gGCUCgGCgCCGagCCCgCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 11874 0.66 0.517331
Target:  5'- cUCGcGUCGCGGCgauUCGGGCcGCAuCGAg -3'
miRNA:   3'- -GGCuCGGCGCCG---AGCCCG-CGUcGCUg -5'
29409 3' -64.1 NC_006151.1 + 13176 0.71 0.281409
Target:  5'- aCGGucGCCGCGGCcgucUCGGGgccCGCGGCGcCg -3'
miRNA:   3'- gGCU--CGGCGCCG----AGCCC---GCGUCGCuG- -5'
29409 3' -64.1 NC_006151.1 + 14158 0.68 0.454332
Target:  5'- -gGAGCCGCGccccGCUCGaGGaCGCccGGaCGACg -3'
miRNA:   3'- ggCUCGGCGC----CGAGC-CC-GCG--UC-GCUG- -5'
29409 3' -64.1 NC_006151.1 + 15431 0.75 0.157203
Target:  5'- uCCGAGuuuagcuuCCGCGGCUCGGuGUGCgaGGaCGACg -3'
miRNA:   3'- -GGCUC--------GGCGCCGAGCC-CGCG--UC-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.