miRNA display CGI


Results 1 - 20 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29409 3' -64.1 NC_006151.1 + 142235 0.68 0.403797
Target:  5'- gCCGGGUCGCgacgaGGCgUCGGucauCGCGGCGAg -3'
miRNA:   3'- -GGCUCGGCG-----CCG-AGCCc---GCGUCGCUg -5'
29409 3' -64.1 NC_006151.1 + 141993 0.66 0.535984
Target:  5'- cCCGGGaaaaagagCGCGGCgUgGGGCgGguGUGGCa -3'
miRNA:   3'- -GGCUCg-------GCGCCG-AgCCCG-CguCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 141601 0.71 0.287084
Target:  5'- -aGAGCCGCccGGCgaggcugccgggaUCGGGCgggucgcugccGCGGCGGCg -3'
miRNA:   3'- ggCUCGGCG--CCG-------------AGCCCG-----------CGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 141488 0.76 0.13388
Target:  5'- uCCGAGagccuCCGCGGCgaCGGGCGUcuccacgggggccgaGGCGACg -3'
miRNA:   3'- -GGCUC-----GGCGCCGa-GCCCGCG---------------UCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 141391 0.71 0.290276
Target:  5'- cCCGGGCaaacaGCGGCguguccggcgaucggUgCGGGCGCGGCccGGCg -3'
miRNA:   3'- -GGCUCGg----CGCCG---------------A-GCCCGCGUCG--CUG- -5'
29409 3' -64.1 NC_006151.1 + 141153 0.7 0.307322
Target:  5'- aCGAGCaccaucggGCGGUcuUCGGG-GUAGCGGCa -3'
miRNA:   3'- gGCUCGg-------CGCCG--AGCCCgCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 139653 0.67 0.471926
Target:  5'- -gGGGUCGCGGC--GGGCGCGccgccCGACa -3'
miRNA:   3'- ggCUCGGCGCCGagCCCGCGUc----GCUG- -5'
29409 3' -64.1 NC_006151.1 + 139601 0.8 0.072788
Target:  5'- cCCGAGCgGCGGCccgucCGGGCGCGGCu-- -3'
miRNA:   3'- -GGCUCGgCGCCGa----GCCCGCGUCGcug -5'
29409 3' -64.1 NC_006151.1 + 138198 0.66 0.539743
Target:  5'- cCCGuGCUGCGGCaccUcgacgcgcacuucaaCGGGCGC-GCGcACg -3'
miRNA:   3'- -GGCuCGGCGCCG---A---------------GCCCGCGuCGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 137910 0.67 0.471926
Target:  5'- gUCGAcgGCgGCGGCUgccaCGGGCGCcugcuccccuuuGGgGACg -3'
miRNA:   3'- -GGCU--CGgCGCCGA----GCCCGCG------------UCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 136984 0.72 0.240281
Target:  5'- gCCGcGCCG-GGCggCGGGCGCGcGCGcACg -3'
miRNA:   3'- -GGCuCGGCgCCGa-GCCCGCGU-CGC-UG- -5'
29409 3' -64.1 NC_006151.1 + 136807 0.67 0.506264
Target:  5'- gCCGcGCuCGCGGCcgacgcgccgcgCGGGCuCuGCGACg -3'
miRNA:   3'- -GGCuCG-GCGCCGa-----------GCCCGcGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 136405 0.68 0.44567
Target:  5'- cCUGAGCgGCuacGCgCGGGgcccCGCGGCGGCg -3'
miRNA:   3'- -GGCUCGgCGc--CGaGCCC----GCGUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 135932 0.68 0.444808
Target:  5'- gCGcucuGCCGCGGggagcccCUCGcGGCGCGG-GACg -3'
miRNA:   3'- gGCu---CGGCGCC-------GAGC-CCGCGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 135863 0.66 0.535984
Target:  5'- aCCGGGCaCGUGGCcagCGucCGCGuGCGGCc -3'
miRNA:   3'- -GGCUCG-GCGCCGa--GCccGCGU-CGCUG- -5'
29409 3' -64.1 NC_006151.1 + 135357 0.68 0.403797
Target:  5'- gCGAGCCGCcgcgcguuGGCcgCGuGCGCcGCGACc -3'
miRNA:   3'- gGCUCGGCG--------CCGa-GCcCGCGuCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 135152 0.67 0.498943
Target:  5'- aCCcAGCC-CGGC--GGGCGCGGCccgGACg -3'
miRNA:   3'- -GGcUCGGcGCCGagCCCGCGUCG---CUG- -5'
29409 3' -64.1 NC_006151.1 + 135114 0.66 0.526627
Target:  5'- nCGguAGCgCGCGGggCGGGCuggGCGGgGACg -3'
miRNA:   3'- gGC--UCG-GCGCCgaGCCCG---CGUCgCUG- -5'
29409 3' -64.1 NC_006151.1 + 135083 0.69 0.356964
Target:  5'- cUCGGGCggggGCGGCggggcCGGGCG-GGCGGCg -3'
miRNA:   3'- -GGCUCGg---CGCCGa----GCCCGCgUCGCUG- -5'
29409 3' -64.1 NC_006151.1 + 134980 0.66 0.517331
Target:  5'- uCCGGGCCuucuCGGg-CGGGCGCgucuuGGCGGg -3'
miRNA:   3'- -GGCUCGGc---GCCgaGCCCGCG-----UCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.