Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29409 | 5' | -57.8 | NC_006151.1 | + | 114178 | 1.1 | 0.001222 |
Target: 5'- cUCGUGCUGGCCUACGUGCAGCAGCUCa -3' miRNA: 3'- -AGCACGACCGGAUGCACGUCGUCGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 62245 | 0.77 | 0.223148 |
Target: 5'- gUCGUGUccGG-CUACGUGCAGguGCUCc -3' miRNA: 3'- -AGCACGa-CCgGAUGCACGUCguCGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 103278 | 0.74 | 0.341892 |
Target: 5'- aCGUGCUGaGCCaggagACGcGCGcGCGGCUCg -3' miRNA: 3'- aGCACGAC-CGGa----UGCaCGU-CGUCGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 59731 | 0.73 | 0.41641 |
Target: 5'- aCGggGUUGGCgaGCGcgcGCAGCAGCUCc -3' miRNA: 3'- aGCa-CGACCGgaUGCa--CGUCGUCGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 121044 | 0.72 | 0.452566 |
Target: 5'- uUUGUGCUGGCCUgcccgcGCGUG-GGCuucacguGCUCg -3' miRNA: 3'- -AGCACGACCGGA------UGCACgUCGu------CGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 113333 | 0.71 | 0.490367 |
Target: 5'- cCGUGCUGGCgCUggcgcugaagcACGUGC-GCGGC-Cg -3' miRNA: 3'- aGCACGACCG-GA-----------UGCACGuCGUCGaG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 112841 | 0.71 | 0.509812 |
Target: 5'- gCGUGCUcacGCUcguggACGUGCAGCGGCa- -3' miRNA: 3'- aGCACGAc--CGGa----UGCACGUCGUCGag -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 67793 | 0.71 | 0.519655 |
Target: 5'- aCGUGCUccacgcGGCaCUcGCG-GCAGCAGCUg -3' miRNA: 3'- aGCACGA------CCG-GA-UGCaCGUCGUCGAg -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 106545 | 0.7 | 0.528577 |
Target: 5'- cCGUGCUGGCgCgcAUGUGCAuccccccGCGGCUg -3' miRNA: 3'- aGCACGACCG-Ga-UGCACGU-------CGUCGAg -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 71761 | 0.7 | 0.559713 |
Target: 5'- cCGcGCgUGGuCCUGCG-GCAGCGGCg- -3' miRNA: 3'- aGCaCG-ACC-GGAUGCaCGUCGUCGag -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 64321 | 0.7 | 0.559713 |
Target: 5'- cCGUGCUGGCCUcgcaccACGU-CGGCGGg-- -3' miRNA: 3'- aGCACGACCGGA------UGCAcGUCGUCgag -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 39468 | 0.69 | 0.590311 |
Target: 5'- cCGUgcGCUGGCCcGgGUGCcGCgAGCUCc -3' miRNA: 3'- aGCA--CGACCGGaUgCACGuCG-UCGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 81594 | 0.69 | 0.610876 |
Target: 5'- gCGUcGCcggGGCCgccgGCGcGCAGCAGCa- -3' miRNA: 3'- aGCA-CGa--CCGGa---UGCaCGUCGUCGag -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 114314 | 0.69 | 0.621187 |
Target: 5'- aCGUGCUgcgcgacgggGGCCUgcgcgACGUGC-GCGuGCUCu -3' miRNA: 3'- aGCACGA----------CCGGA-----UGCACGuCGU-CGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 85933 | 0.69 | 0.631505 |
Target: 5'- ---gGCUgGGCCUGCugcUGCAGCAGC-Cg -3' miRNA: 3'- agcaCGA-CCGGAUGc--ACGUCGUCGaG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 127965 | 0.68 | 0.662432 |
Target: 5'- cUCG-GCgaaggGGUCcacguacuCGUGCGGCGGCUCc -3' miRNA: 3'- -AGCaCGa----CCGGau------GCACGUCGUCGAG- -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 104585 | 0.68 | 0.662432 |
Target: 5'- aCGUGCUgcaGGCCgGCG-GCAGCcGCg- -3' miRNA: 3'- aGCACGA---CCGGaUGCaCGUCGuCGag -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 120757 | 0.68 | 0.68294 |
Target: 5'- gCGUcaUGGCCUGgGUGCGGCGcccGCUg -3' miRNA: 3'- aGCAcgACCGGAUgCACGUCGU---CGAg -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 131941 | 0.68 | 0.68294 |
Target: 5'- cCGUaGCUGGCCacggGCGagggcggGCGGCAGUa- -3' miRNA: 3'- aGCA-CGACCGGa---UGCa------CGUCGUCGag -5' |
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29409 | 5' | -57.8 | NC_006151.1 | + | 69700 | 0.68 | 0.693134 |
Target: 5'- gUCGaUGgUGGCCgccgcCGgggGCAGCAGCg- -3' miRNA: 3'- -AGC-ACgACCGGau---GCa--CGUCGUCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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